An update on sequenced chloroplast genomes of Bryophytes
DOI:
https://doi.org/10.14719/pst.2015.2.4.143Keywords:
Bryophytes, hornworts, liverworts, mosses, chloroplast genomeAbstract
The sequencing of complete chloroplast genome of Marchantia polymorpha paved the way to know the structure and organization of chloroplast genomes of other plants. Since then ~747 chloroplast genomes have been sequenced. However, in comparison to the tracheophytes, a small number of complete chloroplast genome sequences of bryophytes are available (only 4 liverworts, 6 mosses and 2 hornwort). This review represents an update on sequenced chloroplast genomes of bryophytes.
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Bell, N. E., J. L. Boore, B. D. Mishler, and J. Hyvonen. 2014. Organellar genomes of the four-toothed moss, Tetraphis pellucida. BMC Genomics 15: 383.
Forrest, L. L., N. J. Wickett, C. J. Cox, and B. Goffinet. 2011. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure. Plant Ecol Evol 144: 29-43.
Grosche, C., H. T. Funk, U. G. Maier, and S. Zauner. 2012. The chloroplast genome of Pellia endiviifolia: gene content, RNA-editing pattern, and the origin of chloroplast editing. Genome Biol Evol 4: 1349-1357.
Kapil, A., P. K. Rai, and A. Shanker. 2014. ChloroSSRdb: a repository of perfect and imperfect chloroplastic simple sequence repeats (cpSSRs) of green plants. Database (Oxford) 2014 doi: 10.1093/database/bau107.
Kugita, M., A. Kaneko, Y. Yamamoto, Y. Takeya, T. Matsumoto, and K. Yoshinaga. 2003. The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants. Nucleic Acids Res 31: 716-721.
Kumar, M., A. Kapil, and A. Shanker. 2014. MitoSatPlant: mitochondrial microsatellites database of viridiplantae. Mitochondrion 19: 334-337.
Ohyama, K., H. Fukuzawa, T. Kohchi, H. Shirai, T. Sano, S. Sano, K. Umesono, Y. Shiki, M. Takeuchi, Z. Chang, S. Aota, H. Inokuchi, and H. Ozeki. 1986. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572- 574.
Ohyama, K., H. Fukuzawa, T. Kohchi, T. Sano, S. Sano, H. Shirai, K. Umesono, Y. Shiki, M. Takeuchi, Z. Chang, H. Inokuchi, and H. Ozeki. 1988. Structure and organization of Marchantia polymorpha chloroplast genome. I. Cloning and gene identification. J Mol Biol 203: 281-298.
Oliver, M.J., A. G. Murdock, B. D. Mishler, J. V. Kuehl, J. L. Boore, D. F. Mandoli, K. D. Everett, P. G. Wolf, A. M. Duffy, and K. G. Karol. 2010. Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes. BMC Genomics 11: 143.
Shanker, A. 2012. Chloroplast Genomes of Bryophytes: A Review. Arch Bryol 143: 1-5.
Shanker, A. 2013a. Paraphyly of bryophytes inferred using chloroplast sequences. Arch Bryol 163: 1-5.
Shanker, A. 2013b. Inference of bryophytes paraphyly using mitochondrial genomes. Arch Bryol 165: 1-5.
Shanker, A. 2013c. Combined data from chloroplast and mitochondrial genome sequences showed paraphyly of bryophytes. Arch Bryol 171: 1-9.
Sugiura, C. Y., S. Kobayashi, Aoki, C. Sugita, and M. Sugita. 2003. Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Res 31: 5324-5331.
Sugiura, M. 1989. The chloroplast chromosomes in land plants. Annu Rev Cell Biol 5: 51-70.
Villarreal, J. C., L. L. Forrest, N. Wickett, and B. Goffinet. 2013: The plastid genome of the hornwort Nothoceros aenigmaticus (Dendrocerotaceae): phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain. Am J Bot 100: 467-477.
Wickett, N.J., Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, P. G. Wolf, C. W. DePamphilis, J. L. Boore, and Goffinet B. 2008. Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Mol Biol Evol 25: 393-401.
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