Marker assisted breeding of Sub1 introgressed rice (Oryza sativa L.) lines and identification of stable variety MTU 1232 suitable for flood prone ecosystem
DOI:
https://doi.org/10.14719/pst.2801Keywords:
Sub1A, AMMI stability, flash floods, stagnant floods, riceAbstract
The Development of flood-tolerant rice varieties is a prerequisite for climate resilience in flood-prone areas. The present study aimed to develop a stable, high, yielding, and tolerant rice variety against flash floods and stagnant flooding across multiple environments. Sub1A was incorporated into a popular rice variety MTU 1075 using Swarna-sub1 as a donor to generate BC3F5 families. Sub1BC2 was used as a foreground marker for selection, a proxy for the Sub1A gene. RM23865 and RM464 on Chromosome 9 were used as recombinant markers. Backcross families from the BC3F2 generation were evaluated under two weeks of flash floods 15 days after transplanting. This was followed by stagnant flooding and survived BC3F4 families were used for background selection using a 50K high-density SNP chip. The nine best families identified were included in the field trial evaluation under eight environments. Consequently, MTU Rice 1232 was identified as a high-yielding, flood-tolerant rice variety using Additive Main effects and Multiplicative Interaction stability analysis. The MTU Rice 1232 ranked first by the Best linear unbiased prediction (BLUP) based ranking parameters and 4th based on stability parameters ranking. This flood-tolerant rice variety can tolerate both flash floods and stagnant flooding and possesses an 80% survival rate. It has a yield potential of 3792 Kg ha-1 under severe floods and 6000 Kg ha-1 under normal conditions.
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Pradhan SK, Pandit E, Pawar S, Baksh SY, Mukherjee AK, Mohanty SP. Development of flash-flood tolerant and durable bacterial blight resistant versions of mega rice variety ‘Swarna’ through marker-assisted backcross breeding. Scientific Reports. 2019;9(1):12810. https://doi.org/10.1038/s41598-019-49176-z
Mackill DJ, Ismail AM, Pamplona AM, Sanchez DL, Carandang JJ, Septiningsih EM. Stress tolerant rice varieties for adaptation to a changing climate. Crop Environment Bioinformatics. 2010;7:250-59. https://doi.org/10.130061/CEB.201012.0004
Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S et al. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature. 2006;442(7103):705. https://doi.org/10.1038/nature04920.
Girija Rani M, Satyanarayana PV, Suryanarayana Y, Ramanarao PV, Neerajakshi Ch, Chamundeswari N et al. Enhancement of flood tolerance in a high yielding rice variety ‘Amara’ by marker assisted selection. SABRAO Journal of Breeding and Genetics. 2015;47(4):439-47. https://sabraojournal.org/wp-content/uploads/2018/01/SABRAO-J-Breed-Genet-474-439-447-Girijarani.pdf
Renu S, Yashi S, Suchit X, Verulkar S, Neera Y, Shweta S et al. From QTL to variety-harnessing the benefits of QTLs for drought, flood and salt tolerance in mega rice varieties of India through a multi-institutional network. Plant Science. 2016;242:278-87. https://doi.org/: 10.1016/j.plantsci.2015.08.008
Akinwale MG, Akinwaye BO, Odiyi AC, Nwilene F, Osekita OS, Shittu A. Development of flood tolerant rice variety: An enhancement to food security in Nigeria. Journal of Applied Biotechnology. 2017;5(2):46-56. https://doi.rg/ 10.5296/jab.v5i2.11525
Aditi B, Pawan J, Neera Y, Renu S, Yashi S, Balwant S et al. Genomics-assisted backcross breeding for infusing climate resilience in high-yielding green revolution varieties of rice. Indian Journal of Genetics and Plant Breeding. 2019;79(1):160-70. https://doi.org/10.31742/IJGPB.79S.1.5
Arvind Kumar, Nitika S, ChallaV, Rahul P, ShaileshY, Ratna Rani M et al. Development of introgression lines in high yielding, semi dwarf genetic backgrounds to enable improvement of modern rice varieties for tolerance to multiple abiotic stresses free from undesirable linkage drag. Scientific Reports. 2020;10:13073. https://doi.org/10.1038/s41598-020-70132-9
Sarkar RK, Bhattacharjee B. Rice genotypes with Sub1 QTL differ in submergence tolerance, elongation ability during sub- mergence and re-generation growth at re-emergence. Rice. 2011;5:7. https://doi.org/10.1007/s12284-011-9065-z
Sandhya Rani K, Kutubuddin AM, Krishnendu C, Sarkar RK, Pravat Kumar M. Introgression of Sub1 (SUB1) QTL in mega rice cultivars increases ethylene production to the detriment of grain- filling under stagnant flooding. Scientifc Reports. 2019;9:18567. https://doi.org/10.1038/s41598-019-54908-2
Sukanta KS, Sarangi SS, Maji B, Sharma PC, Srivastava AK, Burman D et al. SUB1 varieties increased rice (Oryza sativa) yield in flood-prone rainfed lowlands of coastal regions. Indian Journal of Agricultural Sciences. 2020;90(11):2064-70. https://doi.org/10.56093/ijas.v90i11.108561
Gauch HGJr. A simple protocol for AMMI analysis of yield trials. Crop Science. 2013;53:1860-69. https://doi.org/10.2135/cropsci2013.04.0241
Gauch HG. Model selection and validation for yield trials with interaction. Biometrics. 1988;44:705. https://doi.org/10.2307/2531585
Yan W, Hunt LA, Sheng Q, Szlavnics Z. Cultivar evaluation and mega-environment investigation based on the GGE biplot. Crop Science. 2000;40:597. https://doi.org/10.2135/cropsci2000.403597x
Ikmal AM, Noraziyah AAS, Ellina ZPD, RianaT, Amira I, Wickneswari R et al. Genotype-by-environment interaction and stability analysis of qDTYs pyramided rice (Oryza sativa) lines under water-limited environments. International Journal of Agriculture and Biology. 2020;24:1835-44. https://doi.org/10.17957/IJAB/15.1628
Divya B, Subrahmanyam D, Jyothi B, Krishnam Raju A, VenkateswaraRao Y, Kavitha B et al. Genotype × environment interactions of yield traits in backcross introgression lines derived from Oryza sativa cv. Swarna/Oryza nivara. Frontiers in Plant Science. 2016;7:1530. https://doi.org/ 10.3389/fpls.2016.01530.
Krishnamurthy SL, Sharma PC, Sharma DK, Ravikiran KT, Singh YP, MishraVK et al. Identification of mega environments and rice genotypes for general and specific adaptation to saline and alkaline stresses in India. Scientific Reports. 2016;7:7968. https://doi.org/10.1038/s41598-017-08532-7
Mohapatra S, Panda AK, Bastia AK, Mukherjee AK, Sanghamitra P, Meher J et al. Development of submergence-tolerant, bacterial blight-resistant and high-yielding near isogenic lines of popular variety, ‘Swarna’ through marker-assisted breeding approach. Frontiers in Plant Science. 2021;12:672-81. https://doi.org/ 10.3389/fpls.2021.672618
Wu YP, Wang SM, Chang YC, Ho C, Hsu YC. Submergence gene Sub1A transfer into drought-tolerant japonica rice DT3 using marker-assisted selection. Interantional Journal of Molecular Sciences. 2021;22:13365. https://doi.org/10.3390/ijms222413365
Nugrahaa Y, Nurul H, Trisnaningsiha Dini Y, Shinta A, Triny SK. Phenotypic performance of Ciherang-sub1 near isogenic line as an adaptive variety for flooding conditions. Indonesian Journal of Agricultural Science. 2017;18(1):7-16. https://doi.org/10.21082/ijas.v18n1.2017.p7-16
Sandhu N, Shalabh Dixit, Swamy BPM, Anitha Raman, Santosh Kumar, Singh SP et al. Marker assisted breeding to develop multiple stress tolerant varieties for flood and drought prone areas. Rice. 2019;12:8. https://doi.org/10.1186/s12284-019-0269-y
Zheng K, Subudhi PK, Domingo J, Magantay G, Huang N. Rapid DNA isolation for marker assisted selection in rice breeding. Rice Genetics News Letter. 1995;12:255-58.
Ashish Gautam SK, Chetia MK, Ahmed T. Phenotypic screening and evaluation of Sub1 introgressed lines in popular rice varieties Ranjit and Bahadur of Assam, India. Internationl Journal of Current Microbiology and Applied Science. 2019;7(9):1744-55. https://doi.org/10.20546/ijcmas.2018.709.211
Yang C, Lu B, Ma B, Chen SY, Zhang JS. Ethylene signaling in rice and Arabidopsis: Conserved and diverged aspects. Molecular Plant. 2015;8:495-505. https://doi.org/10.1016/j.molp.2015.01.003
Rina HW, Indrastuti AR, Bambang SP, Willy BS, Nurul K. Screening of submergence tolerant rice under artificial condition based on multiple selection indices. Plant Breeding Biotechnology. 2019;7(4):360-74. https://doi.org/10.9787/PBB.2019.7.4.360
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- 05-05-2024 (2)
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Copyright (c) 2024 Girija Rani Merugumala, Satyanarayana P. V, Venkata Ramana Rao P, Suryanarayana Y, Singh N. K, Kondayya K, Kasturi T, Ravi Kumar B.N.V.S.R, Chamundeswari N, Srinivas T, Suneetha Y
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