Genetic diversity in Algerian diploid and tetraploid oats (Avena L.) based on their morphological characters and eco-geographical parameters

Authors

  • Yacer Boudersa Laboratoiry of Genetic, University of Mentouri Brothers, Constantine 1, 25000 Constantine, Algeria https://orcid.org/0000-0001-7472-2805
  • Djamila Benouchenne (1) Laboratoiry of Genetic, University of Mentouri Brothers, Constantine 1, 25000 Constantine, Algeria & (2) Higher National School of Biotechnology Taoufik KHAZNADAR, Nouveau Pôle Universitaire Ali Mendjili, BP. E66, Constantine, 25100, Algeria https://orcid.org/0000-0002-9432-2742
  • Ines Bellil Laboratoiry of Genetic, University of Mentouri Brothers, Constantine 1, 25000 Constantine, Algeria https://orcid.org/0000-0003-2718-3102
  • Douadi Khelifi (1) Laboratoiry of Genetic, University of Mentouri Brothers, Constantine 1, 25000 Constantine, Algeria & (2) Higher National School of Biotechnology Taoufik KHAZNADAR, Nouveau Pôle Universitaire Ali Mendjili, BP. E66, Constantine, 25100, Algeria https://orcid.org/0000-0001-8139-5064

DOI:

https://doi.org/10.14719/pst.2896

Keywords:

Avena, morphology, eco-geography, genomic, Mediterranean climate

Abstract

This study was conducted to determine the different ploidy levels of various species of the genus Avena, located in northern Algeria, using different morphological and eco-geographical parameters. The specific objectives of the investigation were to estimate phenotypic diversity for different morphological descriptors. One hundred and thirty-eight populations of the genus Avena were collected from 98 different sites in northern Algeria. Harvest sites were determined based on latitude, longitude, and altitude. The pluviothermic Emberger quotient (Q2) was identified by combining three climatic factors (P = annual rainfall, M = average of the maximum temperature of the warmest month, and m = average of the minimum temperature of the coldest month). The interpretation of this quotient required the use of the Emberger climate diagram, which placed each station in one of the 54 combinations of bioclimatic Mediterranean climate. To evaluate intra and inter-specific morphological variations and the extent to which they express genomic variations, the ordination-based Principal Component Analysis was performed. The results showed the presence of the following species: A. barbata with 59 accessions, A. wiestï with 27 accessions, 21 accessions of A. hirtula, 13 accessions of A. longiglumis, 9 accessions of A. macrostachya, 3 accessions of A. clauda, 4 accessions of A. eriantha (ex-Pilosa), and 2 accessions of A. ventricosa. Quantitative traits were crucial for distinguishing inter and intra-specific individuals. Morphological variations proved largely to express genomic variation among the species studied, especially in distinguishing between species carrying both A and C genomes. The morphological differences could not convey the genomic differences among species that share the C genome.

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References

Baum BR. Oats: wild and cultivated: a monograph of the genus Avena L. (Poaceae). Biosystematics Research Institute: Canada Department of Agriculture, Research Branch. Ottawa, Ontario, Canada. 1977. Available from: http://publications.gc.ca/site/archivee-archived.html?url=https://publications.gc.ca/collections/collection_2015/aac-aafc/A54-3-14-1977-eng.pdf

Raina SN, Rani V. GISH technology in plant genome research. Methods Cell Sci. 2001;23:83-104. https://doi.org/10.1023/A:1013197705523.

Linares C, Ferrer E, Fominaya A. Discrimination of the closely related a and d genomes of the hexaploid oat Avena sativa L. Proc Natl Acad Sci. 1998;95(21):12450-455. https://doi.org/ 10.1073/pnas.95.21.12450

Ananiev EV, Vales MI, Phillips RL, Howard W, Rines HW. Isolation of A/D and C genome specific dispersed and clustered repetitive DNA sequences from Avena sativa. Genome. 2002;45(2):431-41. https://doi.org/10.1139/g01-148.

Liu Q, Li X, Zhou X, Li M, Zhang F, Schwarzacher T et al. The repetitive DNA landscape in Avena (Poaceae): chromosome and genome evolution defined by major repeat classes in whole-genome sequence reads. BMC Plant Biol. 2019;19:226. https://doi.org/ 10.1186/s12870-019-1769-z

Quezel P, Santa S. New flora of Algeria and the southern desert regions. Volume 1 : National Center for Scientific Research, Paris7, France. 1962 ;120-22. [cited 16 April 2023]. Available from: http://ecologia-mediterranea.univ-avignon.fr/wp-content/uploads/sites/25/2019/01/ecologia-mediterranean-442-2018-LR.pdf.

Loskutov IG. On evolutionary pathways of Avena species. Genet Resour Crop Evol. 2007;55(2):211-20. https://doi.org/10.1007/s10722-007-9229-2.

Kirkland KJ. Spring wheat (Triticum aestivum) growth and yield as influenced by duration of Wild Oat (Avena fatua) competition. Weed Technology. 1993;7(4):890-93. https://doi.org/10.1017/S0890037X00037945.

Cosson ME. Classification of species of the Avena genus of the Avena Sativa group (Avena, Sect. Arenalypus). Considerations on the composition and structure of the spikelet in the Gramineae family. Bulletin of the Botanical Society of France. 1854;1(1):11-18. http://dx.doi.org/10.1080/00378941.1854.10825398.

Battandier JA, Trabut L. Flora of Algiers and Catalog of plants of Algeria, or systematic enumeration of all the plants reported to date as spontaneous in Algeria, with description of the species found in the Algiers region: Monocotyledons. Algiers, Algeria: Adolphe Jourdan

;60-63. Available from : https://gallica.bnf.fr/ark:/12148/bpt6k64369281/f23.item.texteImage#.

Stanton TR. Oat identification and classification: Technical bulletin N° 1100. United States Department of Agriculture, AgEcon. Washington, D.C., USA. 1955. Available from: https://ageconsearch.umn.edu/record/156755/files/tb1100.pdf.

Coffman FA. Oat history, identification and classification: Technical bulletin N° 1516. United States Department of Agriculture, AgEcon. Washington, D.C., USA. 1977. Available from : https://ageconsearch.umn.edu/record/156755/files/tb1100.pdf

Bory MM, Durieu DM. Scientific exploration of Algeria during the years 1840, 1841, 1842, Physical sciences “Botany”: Paris, France. 1846;1:44. https://bibdigital.rjb.csic.es/en/records/item/12937-exploration-scientifique-de-l-algerie-atlas

Ladizinsky G. Genome relationships in the diploid oats. Chromosoma. 1974;47(1):109-17. https://doi.org/10.1007/BF00326275.

Fominaya A, Vega C, Ferrer E. Giemsa C-banded karyotypes of Avena species. Genome. 1988;30(5):627-32. https://doi.org/10.1139/g88-106.

Thomas H. Cytogenetics of Avena. In: Marshall HG, Sorrells ME, editors. Oat science and technology-Agronomy monograph N° 33 [e-Book]. Madison: American Society of Agronomy and Crop Science Society of America, 677 S. Segoe Rd., USA. 1992;33:473-507. Available from: https://doi.org/10.2134/agronmonogr33.c14.

Diederichsen A. Assessments of genetic diversity within a world collection of cultivated hexaploid oat (Avena sativa L.) based on qualitative morphological characters. Genet Resour Crop Evol. 2008;55(3):419-40. https://doi.org/10.1007/s10722-007-9249-y.

Badaeva ED, Shelukhina OY, Diederichsen A, Loskutov IG, Pukhalskiy VA. Comparative cytogenetic analysis of Avena macrostachya and diploid C-genome Avena species. Genome. 2010;53(2):125-37. https://doi.org/10.1139/G09-089.

Aissat A, Amirouche R, Amirouche N. Cytotaxonomic investigation and meiotic behavior of natural populations of genus Avena in Algeria. Euphytica. 2019;215(10). https://doi.org/10.1007/s10681-019-2490-6.

Malzew AI. Wild and cultivated oats, section Euavenagriseb. Supplement no 38, VIR institute: Leningrad, Russian; 1930.

Ladizinsky G. Studies in oat evolution. Briefs in Agriculture. 2012. https://doi.org/10.1007/978-3-642-30547-4_1.

Seltzer P, Auberty E, Seltzer P, Fourey A, Queney P, Grandjean A, Lasser A. The Algerian Climat. impr. The Typo-Lithoet of J Carbonelreunites Algiers, Algeria. 1946. http://catalogue.bnf.fr/ark:/12148/cb326256944.

Emberger L. A biogeographic classification of climates. Collection, geolo-zoological laboratory work, Faculty of Sciences. Botanical Service. Montpellier. 1955;7:3-43

Stewart P. Pluviothermal quotient and biospheric degradation. Bulletin of the National History Society of North Africa. 1969;59:23-36.

Mantel N. Adaptation of karber’s method for estimating the exponential parameter from quantal data and its relationship to birth, death and branching processes. Biometrics. 1967;23(4):739-46. https://doi.org/10.2307/2528425.

Parra-Quijano M, Iriondo JM, Torres E. Applications of ecogeography and geographic information systems in conservation and utilization of plant genetic resources. Span J Agric Re. 2012;10(2):419-29. https://doi.org/10.5424/sjar/2012102-303-11.

Loskutov IG, Melnikova SV, Bagmet LV. Eco-geographical assessment of Avena L. wild species at the VIR herbarium and genebank collection. Genet Resour Crop Evol. 2015;64(1):177-88. https://doi.org/10.1007/s10722-015-0344-1.

Daget P. The Mediterranean bioclimate: Analysis of climatic forms using the Emberger system. Vegetatio. 1977;34(2):87-103. https://doi.org/10.1007/BF00054477.

Constandinou S, Nikoloudakis N, Kyratzis AC, Katsiotis A. Genetic diversity of Avena ventricosa populations along an ecogeographical transect in Cyprus is correlated to environmental variables. Plos One. 2018;13(3):e0193885. https://doi.org/10.1371/journal.pone.0193885.

Loskutov IG. The collection of wild oat species of C.I.S. as a source of diversity in agricultural traits. Genet Resour Crop Evol. 1998;45(4):291-95. https://doi.org/10.1023/A:1008643705223.

Mantai RD, Da Silva JAG, Marolli A, de Mamann ÂTW, Sawicki S, Krüger CAMB. Simulation of oat development cycle by photoperiod and temperature. R Bras de Eng Agríc Ambiental. 2017;21(1):3-8. https://doi.org/10.1590/1807-1929/agriambi.v21n1p3-8.

Adkins SW, Loewen M, Symons SJ. Variation within pure lines of wild oats (Avena fatua) in relation to temperature of development. Weed Science. 1987;35(2):169-72. https://doi.org/10.1017/S0043174500078991.

Olivares A, Johnston M, Calderón C. Effect of rainfall regimes on seed production and quality of Avena barbata. Cien Inv Agr. 2009;36(1). https://doi.org/10.4067/S0718-16202009000100006.

Klink K, Wiersma JJ, Christopher J, Crawford CJ, Stuthman DD. Impacts of temperature and precipitation variability in the Northern plains of the United States and Canada on the productivity of spring barley and oat. Int J Climatol. 2013;34:2805-18. https://doi.org/10.1002/joc.3877.

Peltonen-Sainio P. Effect of moderate and severe drought stress on the pre-anthesis development and yield formation of oats. AF Sci. 1991;63(5):379-89. https://journal.fi/afs/article/view/72417/34213.

Ehlers W. Transpiration efficiency of oat. J Agron. 1989;81:810-17. https://doi.org/10.2134/agronj1989.00021962008100050023x.

Pandey HC, Baig MJ, Shahid A, Kumar V, Singh P. Plant height and tiller production in Avena species under water stress and non stress at vegetative and flowering stage. Afr J Biotechnol. 2013. https://www.ajol.info/index.php/ajb/article/view/130586/120165.

Diederichsen A. Duplication assessments in Nordic Avena sativa accessions at the Canadian national gene bank. Genet Resour Crop Evol. 2008;56(4):587-97. https://doi.org/10.1007/s10722-008-9388-9.

Boczkowska M, Nowosielski J, Nowosielska D, Podyma W. Assessing genetic diversity in 23 early Polish oat cultivars based on molecular and morphological studies. Genet Resour Crop Evol. 2014;61(5):927-41. https://doi.org/10.1007/s10722-014-0087-4.

Sheikhehpour S, Bahraminejad S, Cheghamirza K. Morphological and molecular genetic variations of oat genotypes grown in Kermanshah, Iran. Mol Biol Rep. 2014;41(6):4023-30. https://doi.org/10.1007/s11033-014-3271-x.

Bell GDH. The comparative phylogeny of the temperate cereals. In: Sir J Huchinson, edithors. Essays in crop plant evolution [e-Book]. Cambridge UK: Cambridge University Press, United Kingdom. 1965;70-102.

Rajhathy T. Chromosomal differentiation and speciation in diploid Avena. Can J Genet Cytol. 1961;3(4):372-77. https://doi.org/10.1139/g61-044.

Ladizinsky G, Zohary D. Genetic relationships between diploids and tetraploids in series eubarbatae of Avena. Can J Genet Cytol. 1968;10(1):68-81. https://doi.org/10.1139/g68-010.

Shepeleva EM. Karyological research of cultivated and wild species of oat. Doklady AN SSSR. 1939;25(3):215-18.

Nishiyama I. The genetics and cytology of certain cereals. Jpn J Genet. 1929;5(1-2):1-48. https://doi.org/10.1266/jjg.5.1.

Fabijanski S, Fedak G, Armstrong K, Altosaar I. A repeated sequence probe for the C genome in Avena (Oats). Theor Appl Genet. 1990;79:1-7. https://doi:10.1007/bf00223778

Published

28-03-2024 — Updated on 01-04-2024

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1.
Boudersa Y, Benouchenne D, Bellil I, Khelifi D. Genetic diversity in Algerian diploid and tetraploid oats (Avena L.) based on their morphological characters and eco-geographical parameters. Plant Sci. Today [Internet]. 2024 Apr. 1 [cited 2024 Nov. 8];11(2). Available from: https://horizonepublishing.com/journals/index.php/PST/article/view/2896

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