Multi-trait selection in yellow kernel maize (Zea mays L.) genotypes using multi-trait genotype-ideotype distance index

Authors

DOI:

https://doi.org/10.14719/pst.6008

Keywords:

genetic gain, maize, MGIDI, PCA, strength and weakness, multivariate analysis

Abstract

The production of food crops is greatly influenced by maize, which is essential to global food security. Genetic variation and selection are key components in maize breeding that maximize genetic gain and productivity. The present study, 238 maize genotypes were investigated for fourteen quantitative traits to identify diverse and desirable genotypes for future breeding and varietal development programs. Significant genotypic effects were observed for grain yield and its attributes and other agronomic traits, indicating potential for genotype selection. Multivariate PCA analysis revealed that the first four PCs (70.1 % of total variation) effectively captured the considerable diversity within traits. Key traits such as flowering time, plant height, ear height, ear characteristics, and grain yield were essential in distinguishing between the genotypes analyzed. A recently introduced multi-trait-ideotype distance index (MGIDI) was used to predict the selection gain and identify the effectively performed genotypes by considering multiple traits. The MGIDI predicts significant desired genetic gains across all characteristics. Strengths and weaknesses of selected genotypes based on MGIDI provided insights into their overall suitability and factor contributions. The genotypes G32, G76, G163, G212, and G169 were identified as performing better using the MGIDI method, considering their strengths and weaknesses for the traits analyzed. MGIDI is a powerful tool that can help breeders effectively select the most desirable genotypes in maize.

Downloads

Download data is not yet available.

References

Borkhatariya TH, Gohil DP, Sondarava PM, Patel R, Akbari KM. Character association and path co-efficient analysis among diverse genotypes of forage maize (Zea mays L.). Biol Forum Int J. 2022;14(3):829–33.

Food and Agriculture Organization. Statistical Database [Internet]; 2020 [cited:12 Nov, 2024] Rome: FAO. Available from: http://faostat.fao.org

Chauhan Z, Shah SN, Chaudhary CS, Rahevar P. Correlation study of yield attributing traits in maize (Zea mays L.). Int J Agri Appli Sci. 2022;3(2):9–21. https://doi.org/10.52804/ijaas2022.323

Sondarava PM, Patel MB, Borkhatariya TH, Akbari KM, Parmar PK. Correlation and path coefficient analysis of quantitative traits in maize (Zea mays L.). Int J Stat Appli Math. 2023;SP-8(6):1140–44. https://doi.org/10.22271/maths.2023.v8.i6So.1516

Piepho HP, Mo?hring J. Computing heritability and selection response from unbalanced plant breeding trials. Genetics. 2007;177(3):1881–88. https://doi.org/10.1534%2Fgenetics.107.074229

Singh M, Sharma SK, Singh TP, Dutta M. Factor analysis of components of yield and some growth parameters in urdbean (Vigna mungo (L.) Hepper). Indian J Plant Genet Res. 2011;24(3):346–8

Al-Naggar AMM, Shafik MM, Musa RYM. Genetic diversity based on morphological traits of 19 maize genotypes using principal component analysis and GT biplot. Annual Research and Review in Biology. 2020;35(2):68–85. https://doi.org/10.9734/arrb/2020/v35i230191

Mengistu S. Maize germplasm characterization using principal component and cluster analysis. Amer J Bio-Sci. 2021;9:122. https://doi.org/10.11648/j.ajbio.20210904.12

Tang H, Xu C, Jiang Y, Wang J, Wang Z, Tian L. Evaluation of physical characteristics of typical maize seeds in a cold area of North China based on principal component analysis. Processes. 2021;9(7):1167. https://doi.org/10.3390/pr9071167

Sinana HF, Ravikesavan R, Iyanar K, Senthil A. Study of genetic variability and diversity analysis in maize (Zea mays L.) by agglomerative hierarchical clustering and principal component analysis. Elect J Plant Breed. 2023;14(1):43–51. https://doi.org/10.37992/2023.1401.015

Smith H. A discriminant function for plant selection. Annals of Eugenics. 1936;7:240–50. https://doi.org/10.1111/j.1469-1809.1936.tb02143.x

Hazel LN. The genetic basis for constructing selection indexes. Genetics. 1943;28:476–90. https://doi.org/10.1093%2Fgenetics%2F28.6.476

Rocha JRDASDC, Machado JC, Carneiro PCS. Multi-trait index based on factor analysis and ideotype-design: Proposal and application on elephant grass breeding for bioenergy. GCB Bioenergy. 2018;10(1):52–60. http://dx.doi.org/10.1111/gcbb.12443

Olivoto T, Lu?cio ADC, da Silva JAG, Marchioro VS. Mean performance and stability in multi-environment trials I: Combining features of AMMI and BLUP techniques. Agronomy Journal. 2019;111(6):2949–60. http://dx.doi.org/10.2134/agronj2019.03.0220

Olivoto T, Lu?cio ADC, da Silva JAG, Sari BG, Diel MI. Mean performance and stability in multi-environment trials II: selection based on multiple traits. Agronomy Journal. 2019;111:2961–69. http://dx.doi.org/10.2134/agronj2019.03.0221

Jarquin D, Howard R, Crossa J, Beyene Y, Gowda M, Martini JW, et al. Genomic prediction enhanced sparse testing for multi-environment trials. G3 Genes Genomes Genetics. 2020;10:2725–39. https://doi.org/10.1534/g3.120.401349

Woyann LG, Meira D, Matei G, Zdziarski AD, Dallacorte LV, Madella LA. Selection indexes based on linear-bilinear models applied to soybean breeding. Agronomy Journal. 2020;112:175–82. http://dx.doi.org/10.1002/agj2.20044

Zuffo AM, Steiner F, Aguilera JG, Teodoro PE, Teodoro LPR, Busch A. Multi-trait stability index: a tool for simultaneous selection of soya bean genotypes in drought and saline stress. J Agro Crop Sci. 2020; 206(6):815–22. http://dx.doi.org/10.1111/jac.12409

Olivoto T, Nardino M, Meira D, Meier C, Follmann DN, Souza VQ, et al. Multi-trait selection for mean performance and stability in maize. Agronomy Journal. 2021;113:3968–74. https://doi.org/10.1002/agj2.20741

Azrai M, Aqil M, Efendi R, Andayani NN, Makkulawu AT, Iriany RN, et al. A comparative study on single and multiple trait selections of equatorial grown maize hybrids. Frontiers in Sustainable Food Systems. 2023;7:1185102

Palaniyappan S, Ganesan KN, Manivannan N, Ravichandran V, Senthil N. Multi trait genotype-ideotype distance index-A tool for identification of elite parental inbreds for developing heterotic hybrids of fodder maize (Zea mays L.). Electronic Journal of Plant Breeding. 2023;14(3):841–49. https://doi.org/10.37992/2023.1403.098

Singamsetti A, Zaidi PH, Seetharam K, Vinayan MT, Olivoto T, Mahato A, et al. Genetic gains in tropical maize hybrids across moisture regimes with multi-trait-based index selection. Frontiers in Plant Science. 2023;14:1147424. https://doi.org/10.3389/fpls.2023.1147424

Azrai M, Aqil M, Andayani NN, Efendi R, Suarni, Suwardi, et al. Optimizing ensembles machine learning, genetic algorithms and multivariate modeling for enhanced prediction of maize yield and stress tolerance index. Frontiers in Sustainable Food Systems. 2024;8:1334421. https://doi.org/10.3389/fsufs.2024.1334421

Trung DN, Tuan PQ, Anh NTN, Van LV. Phenotypic diversity and selection of superior tropical sweetcorn inbred lines by multivariate method and combining ability analysis. Ecological Genetics and Genomics. 2024;30:100215. http://dx.doi.org/10.2139/ssrn.4516772

Olivoto T, Nardino M. MGIDI: toward an effective multivariate selection in biological experiments. Bioinformatics. 2021;37:1383–89. https://doi.org/10.1093/bioinformatics/btaa981

R Core Team. R: a language and environment for statistical computing [Internet]. Vienna, Austria: R Foundation for Statistical Computing; 2021. Available from: https://www.r-project.org/

Olivoto T, Lu?cio ADC. Metan: An r package for multi-environment trial analysis. Methods in Ecology and Evolution. 2020;11(6):783–89. https://doi.org/10.1111/2041-210X.13384

Wickham H. Ggplot2: Elegant graphics for data analysis. 2nd ed. Cham: Springer; 2016

Kaiser HF. An index of factorial simplicity. Psychometrika. 1974;39(1):31–36. https://doi.org/10.1007/BF02291575

Shrestha J. Cluster analysis of maize inbred lines. J Nepal Agri Res Council. 2016;2:33–36. https://doi.org/10.3126/jnarc.v2i0.16119

Belalia N, Lupini A, Djemel A, Morsli A, Mauceri A, Lotti C, et al. Analysis of genetic diversity and population structure in Saharan maize (Zea mays L.) populations using phenotypic traits and SSR markers. Genetic Resources and Crop Evolution. 2019;66:243–57. https://doi.org/10.1007/s10722-018-0709-3

Yue H, Wei J, Xie J, Chen S, Peng H, Cao H, et al. A study on genotype-by-environment interaction analysis for agronomic traits of maize genotypes across Huang-Huai-Hai region in China. Phyton. 2022;91(1):57. https://doi.org/10.32604/phyton.2022.017308

Zendrato YM, Suwarno WB, Marwiyah S. Multi-trait selection of tropical maize genotypes under optimum and acidic soil conditions. SABRAO J Breed Genet. 2024;56(1):142–55. http://doi.org/10.54910/sabrao2024.56.1.13

Yan W, Fre?geau-Reid J. Genotype by yield × trait (GYT) biplot: a novel approach for genotype selection based on multiple traits. Scientific Reports. 2018;8:8242. https://doi.org/10.1038/s41598-018-26688-8

Published

06-02-2025 — Updated on 13-02-2025

Versions

How to Cite

1.
Sondarava PM, Patel MB, Borkhatariya TH, Parmar DJ, Akbari KM, Ghetiya RL. Multi-trait selection in yellow kernel maize (Zea mays L.) genotypes using multi-trait genotype-ideotype distance index. Plant Sci. Today [Internet]. 2025 Feb. 13 [cited 2025 Mar. 30];12(1). Available from: https://horizonepublishing.com/journals/index.php/PST/article/view/6008

Issue

Section

Research Articles