Research Articles
Early Access
Fertilizer-driven heavy metal contamination in tomato soils: Insights from multivariate source apportionment
Department of Soil Science and Agricultural Chemistry, University of Agricultural Sciences, Gandhi Krishi Vigyan Kendra, Bengaluru 560 065, Karnataka, India
Department of Soil Science and Agricultural Chemistry, University of Agricultural Sciences, Gandhi Krishi Vigyan Kendra, Bengaluru 560 065, Karnataka, India
Department of Soil Science and Agricultural Chemistry, College of Sericulture, Chintamani 563 125, Karnataka, India
Department of Soil Science and Agricultural Chemistry, University of Agricultural Sciences, Gandhi Krishi Vigyan Kendra, Bengaluru 560 065, Karnataka, India
Department of Agronomy, College of Agriculture, Gandhi Krishi Vigyan Kendra, Bengaluru 560 065, Karnataka, India
Abstract
Excessive use of chemical fertilisers has increased the accumulation of heavy metals in agricultural soils, posing serious threats to soil health and food security. However, multi-index ecological risk assessments and depth-wise contamination profiles of soils under intensively fertilised tomato systems in India remain poorly characterized. This study quantified the concentrations of Fe, Mn, Zn, Cu, Cd, Cr, Pb and As, along with associated physicochemical and biological properties, in one hundred soil samples collected from intensively cultivated tomato fields in Chintamani, Karnataka, at both surface (0-20 cm) and subsurface (20-40 cm) depths. Pollution levels were assessed using the geo-accumulation index (Igeo), enrichment factor (EF), pollution index (PI) and ecological risk index (Ei and RI), owing to their ability to account for geogenic variability, anthropogenic inputs and ecological hazards. Potential sources of metals were identified using multivariate statistical methods. Most soil attributes and metal concentrations showed highly significant depth-wise differences (p < 0.001), indicating pronounced anthropogenic enrichment in surface soils. Surface soils exhibited elevated concentrations of Cd (0.66-5.40 mg kg-1), As (9.44-30.80 mg kg-1), Pb (18-39.40 mg kg-1), Mn (525-1870 mg kg-1) and Cu (38.41-83.29 mg kg-1), while Fe, Zn and Cr were below levels of concern. EF and RI identified Cd, As and Pb as priority pollutants, with Cd accounting for more than 60 % of the total ecological risk, despite classification of most soils as "uncontaminated" by Igeo. Subsurface soils had reduced anthropogenic influence, with Cd, Pb, As and Mn remaining the concern. Principal component and cluster analysis distinguished anthropogenic (Cd, As, Pb, Mn and Cu) from geogenic (Fe, Al, Zn and Cr) sources. Depth-specific management, region-specific background values and future work on metal speciation, bioavailability testing and isotopic source tracing are critical for improving ecological risk assessments and safeguarding soil sustainability and food safety in the study area.
References
- 1. Lal R. Soil carbon sequestration impacts on global climate change and food security. Science. 2004;304(5677):1623–27. https://doi.org/10.1126/science.1097396
- 2. Kumar A, Pathak H. State of Indian agriculture. New Delhi: National Academy of Agricultural Sciences; 2024. p. xvi, 59–92. https://doi.org/10.1007/978-3-030-44364-1_1
- 3. Srivastava P, Balhara M, Giri B. Soil health in India: past history and future perspective. In: Giri B, Varma A, editors. Soil health. Cham: Springer International Publishing; 2020. p. 1–19. https://doi.org/10.1007/978-3-030-44364-1_1
- 4. Fertiliser Association of India. Fertiliser statistics 2022–23. New Delhi: FAI; 2023.
- 5. Kabata-Pendias A. Trace elements in soils and plants. 4th ed. Boca Raton (FL): CRC Press, Taylor & Francis Group; 2011. https://doi.org/10.1201/9781420039900
- 6. Li Q, Wang Y, Li Y, Li L, Tang M, Hu W, et al. Speciation of heavy metals in soils and their immobilization at micro-scale interfaces among diverse soil components. Sci Total Environ. 2022;825:153862. https://doi.org/10.1016/j.scitotenv.2022.153862
- 7. Awad M, Liu Z, Skalicky M, Dessoky ES, Brestic M, Mbarki S, et al. Fractionation of heavy metals in multi-contaminated soil treated with biochar using the sequential extraction procedure. Biomolecules. 2021;11(3):448. https://doi.org/10.3390/biom11030448
- 8. Chen X, Ren Y, Li C, Shang Y, Ji R, Yao D, et al. Factors influencing the migration of heavy metals from soil to vegetables in a heavy industry city. Sustainability. 2024;16(24):11084. https://doi.org/10.3390/su162411084
- 9. Gao P, Huang J, Wang Y, Li L, Sun Y, Zhang T, et al. Effects of long-term fertilization on availability, fractionation and environmental risk of cadmium and arsenic in red soils. J Environ Manag. 2021;295:113097. https://doi.org/10.1016/j.jenvman.2021.113097
- 10. International Network on Soil Pollution (INSOP). Report of the first annual meeting of the International Network on Soil Pollution (INSOP-I/23/Report). Rome (Italy): INSOP; 2023.
- 11. Gonçalves Jr AC, Nacke H, Schwantes D, Coelho GF. Heavy metal contamination in Brazilian agricultural soils due to the application of fertilizers. In: Hernandez-Soriano MC, editor. Environmental risk assessment of soil contamination. Rijeka (Croatia): InTech; 2014. p. 73–94. https://doi.org/10.5772/57268
- 12. Milinović J, Lukić V, Nikolić-Mandić S, Stojanović D. Concentrations of heavy metals in NPK fertilizers imported in Serbia. Pestic Fitomed. 2008;23(3):195–200.
- 13. Naccarato A, Vommaro ML, Amico D, Sprovieri F, Pirrone N, Tagarelli A, et al. Triazine herbicide and NPK fertilizer exposure: accumulation of heavy metals and rare earth elements, effects on cuticle melanization and immunocompetence in Tenebrio molitor. Toxics. 2023;11(6):499. https://doi.org/10.3390/toxics11060499
- 14. Perčin A, Zgorelec Ž, Karažija T, Kisić I, Župan N, Šestak I. Metals in mineral nitrogen fertilizers determined using portable X-ray fluorescence. Agronomy. 2023;13(9):2282. https://doi.org/10.3390/agronomy13092282
- 15. Hema HC, Vittala SS, Govindaiah S. Quantitative morphometric inference in hard rock terrain based on SRTM-DEM and GIS: Chintamani watershed, Chikkaballapur district, Karnataka, India. Sustain Water Resour Manag. 2021;7(4):57. https://doi.org/10.1007/s40899-021-00534-8
- 16. Oyebanjo OO, Ekosse GE, Odiyo JO. Mineralogy and geochemistry of clay fractions in soils developed from different parent rocks in Limpopo Province, South Africa. Heliyon. 2021;7(7):e07664. https://doi.org/10.1016/j.heliyon.2021.e07664
- 17. Moore JA, Kimsey MJ, Garrison-Johnston M, Shaw TM, Mika P, Poolakkal J. Influence of geologic soil parent material on forest surface soil chemical characteristics in the inland northwest, USA. Forests. 2022;13(9):1363. https://doi.org/10.3390/f13091363
- 18. Shetty BR, Pai BJ, Salmataj SA, Naik N. Assessment of carcinogenic and non-carcinogenic risk indices of heavy metal exposure in different age groups using Monte Carlo simulation. Sci Rep. 2024;14(1):30319. https://doi.org/10.1038/s41598-024-81109-3
- 19. Bachegowda TR. Farmer’s preference for organic fertilizers in Chikkaballapur district of Karnataka state [dissertation]. Bengaluru (IN): University of Agricultural Sciences, GKVK; 2013.
- 20. India. Department of Fertilizers, Ministry of Chemicals and Fertilizers. MoU No. 23011/5/2025-P&K. New Delhi (IN): Government of India; 2025.
- 21. Sundaresan S, Ramamoorthy R, Nath S, Palur S, Rajora C, Narendra N, et al. A situation analysis: Chikkaballapur-Chintamani Transformation Lab. Bengaluru (IN): Water, Environment, Land and Livelihoods (WELL) Labs, Institute for Financial Management and Research (IFMR) Society; 2025.
- 22. Kimbrough DE, Wakakuwa JR. Acid digestion for sediments, sludges, soils and solid wastes: a proposed alternative to EPA SW-846 Method 3050. Environ Sci Technol. 1989;23(7):898–900. https://doi.org/10.1021/es00065a021
- 23. Fei X, Xiao R, Christakos G, Langousis A, Ren Z, Tian Y, et al. Comprehensive assessment and source apportionment of heavy metals in Shanghai agricultural soils with different fertility levels. Ecol Indic. 2019;106:105508. https://doi.org/10.1016/j.ecolind.2019.105508
- 24. Mediolla LL, Domingues MCD, Sandoval MRG. Environmental assessment of an active tailings pile in the State of Mexico (Central Mexico). Res J Environ Earth Sci. 2008;2:197–208.
- 25. Reimann C, de Caritat P. Intrinsic flaws of element enrichment factors (EFs) in environmental geochemistry. Environ Sci Technol. 2000;34(24):5084–91. https://doi.org/10.1021/es001339o
- 26. Tanner PA, Ma HL, Yu PKN. Fingerprinting metals in urban street dust of Beijing, Shanghai and Hong Kong. Environ Sci Technol. 2008;42(19):7111–7. https://doi.org/10.1021/es8007613
- 27. Chen TB, Zheng YM, Lei M, Huang ZC, Wu HT, Chen H, et al. Assessment of heavy metal pollution in surface soils of urban parks in Beijing, China. Chemosphere. 2005;60(4):542–51. https://doi.org/10.1016/j.chemosphere.2004.12.072
- 28. Hakanson L. An ecological risk index for aquatic pollution control: a sedimentological approach. Water Res. 1980;14(8):975–1001. https://doi.org/10.1016/0043-1354(80)90143-8
- 29. Weissmannová HD, Pavlovský J. Indices of soil contamination by heavy metals: methodology of calculation for pollution assessment (minireview). Environ Monit Assess. 2017;189(12):616. https://doi.org/10.1007/s10661-017-6340-5
- 30. Sahoo PK, Dall’Agnol R, Salomão GN, Ferreira JS Jr, Silva MS, Martins GC, et al. Source and background threshold values of potentially toxic elements in soils by multivariate statistics and GIS-based mapping: a high-density sampling survey in the Parauapebas Basin, Brazilian Amazon. Environ Geochem Health. 2020;42(1):255–82. https://doi.org/10.1007/s10653-019-00345-z
- 31. Sherene T. Mobility and transport of heavy metals in polluted soil environment. Bull Fac Agric Ind J. 2010:112–21.
- 32. Shaw JLA, Ernakovich JG, Judy JD, Farrell M, Whatmuff M, Kirby J. Long-term effects of copper exposure on agricultural soil function and microbial community structure at a controlled experimental field site. Environ Pollut. 2020;263:114411. https://doi.org/10.1016/j.envpol.2020.114411
- 33. Salam AK, Pakpahan AF, Susilowati G, Fernando N, Sriyani N, Sarno S, et al. Residual copper and zinc in tropical soil over 21 years after amendment with heavy metal-containing waste, lime and compost. Appl Environ Soil Sci. 2021;7596840. https://doi.org/10.1155/2021/7596840
- 34. Meharg AA, Zhao FJ. Arsenic and rice. Dordrecht (NL): Springer; 2012. https://doi.org/10.1007/978-94-007-2947-6_3
- 35. Borch T, Kretzschmar R, Kappler A, van Cappellen P, Ginder-Vogel M, Voegelin A, et al. Biogeochemical redox processes and their impact on contaminant dynamics. Environ Sci Technol. 2010;44(1):15–23. https://doi.org/10.1021/es9026248
- 36. Li L, Scheckel KG, Zheng L, Liu G, Xing W, Xiang G. Immobilization of lead in soil influenced by soluble phosphate and calcium: lead speciation evidence. J Environ Qual. 2014;43(2):468–74. https://doi.org/10.2134/jeq2013.07.0272
- 37. Sanusi L, Sanusi J, Ibrahim S, Nawaf A. Determination of heavy metals concentrations in soil and tomato plant (Solanum lycopersicum) from Ajiwa Fadama farms, Katsina State. UMYU Scientifica. 2023;2(4):39–44. https://doi.org/10.56919/usci.2324.005
- 38. Gowda SS, Reddy MR, Govil PK. Assessment of heavy metal contamination in soils at Jajmau (Kanpur) and Unnao industrial areas of the Ganga Plain, Uttar Pradesh, India. J Hazard Mater. 2010;174(1–3):113–21. https://doi.org/10.1016/j.jhazmat.2009.09.024
- 39. Ertani A, Mietto A, Borin M, Nardi S. Chromium in agricultural soils and crops: a review. Water Air Soil Pollut. 2017;228:190. https://doi.org/10.1007/s11270-017-3356-y
- 40. Liang J, Huang X, Yan J, Li Y, Zhao Z, Liu Y, et al. Formation of Cr (VI) via Cr (III) oxidation in soils and groundwater: a review. Sci Total Environ. 2021;774:145762. https://doi.org/10.1016/j.scitotenv.2021.145762
- 41. Arunrat N, Kongsurakan P, Sereenonchai S. Heavy metal contamination and potential health risks in upland rice-producing soils of rotational shifting cultivation in northern Thailand. Environ Sci Eur. 2024;36(1):196. https://doi.org/10.1186/s12302-024-01023-3
- 42. Birghila S, Matei N, Dobrinas S, Popescu V, Soceanu A, Niculescu A. Heavy metal content in soil and Lycopersicon esculentum (tomato) and associated health implications. Biol Trace Elem Res. 2023;201(3):1547–56. https://doi.org/10.1007/s12011-022-03257-9
- 43. Kadam NB, Sangode SJ, Venkateshwarlu M, Meshram DC, Kulkarni YR, Badesab F, et al. Acquisition of natural remanence in basaltic laterites of the Deccan Volcanic Province (India): implications for palaeomagnetic studies. Catena. 2023;228:107154. https://doi.org/10.1016/j.catena.2023.107154
- 44. Aparisi-Navarro S, Moncho-Santonja M, Defez B, Candeias C, Rocha F, Peris-Fajarnés G. Assessing heavy metal contamination in agricultural soils using a GIS-based probabilistic pollution index: a case study from the Guarda region, Portugal. Ann GIS. 2025;31(1):143–62. https://doi.org/10.1080/19475683.2025.2452256
- 45. Niño-Savala AG, Zhuang Z, Ma X, et al. Cadmium pollution from phosphate fertilizers in arable soils and crops: an overview. Front Agric Sci Eng. 2019;6(4):419–30. https://doi.org/10.15302/J-FASE-2019273
- 46. Hartley TN, Macdonald AJ, McGrath SP, Zhao FJ. Historical arsenic contamination of soils due to long-term phosphate fertilizer applications. Environ Pollut. 2013;180:259–64. https://doi.org/10.1016/j.envpol.2013.05.034
- 47. Aktaruzzaman M, Zakir HM, Quadir QF, et al. Toxic heavy metals in agrochemicals available in Bangladesh and their contribution to agricultural soils. Environ Monit Assess. 2024;196:1053. https://doi.org/10.1007/s10661-024-13212-x
- 48. Gunadasa S, Tighe MK, Wilson SC. Arsenic and cadmium leaching in co-contaminated soils and the influence of high rainfall and agronomic amendments. SSRN Electron J. 2022. https://doi.org/10.2139/ssrn.4158191
- 49. Dashtey A. Fate and transport of heavy metals in soil, surface water and groundwater: implications for environmental management. Int J Sci Res Manag. 2024;12:202–15. https://doi.org/10.18535/ijsrm/v12i12.c01
- 50. Wei B, Yang L. A review of heavy metal contamination in urban soils, urban road dusts and agricultural soils in China. Microchem J. 2010;94(2):99–107. https://doi.org/10.1016/j.microc.2009.09.014
- 51. Zhao FJ, Ma Y, Zhu YG, Tang Z, McGrath SP. Soil contamination in China: current status and mitigation strategies. Environ Sci Technol. 2015;49(2):750–9. https://doi.org/10.1021/es5047099
- 52. Shokr MS, Abdellatif MA, El Behairy RA, Abdelhameed HH, El Baroudy AA, Mohamed ES, et al. Assessment of potential heavy metal contamination hazards based on GIS and multivariate analysis in Mediterranean zones. Agronomy. 2022;12(12):3220. https://doi.org/10.3390/agronomy12123220
- 53. Alloway BJ, editor. Heavy metals in soils: trace metals and metalloids in soils and their bioavailability. Springer Science & Business Media; 2012 Jul 18.
- 54. Vepraskas MJ. Morphological methods to characterize hydric soils. Methods in biogeochemistry of wetlands. 2013;10:117–35. https://doi.org/10.2136/sssabookser10.c8
- 55. Zinn YL, de Faria JA, de Araujo MA, Skorupa AL. Soil parent material is the main control on heavy metal concentrations in the tropical highlands of Brazil. Catena. 2020;185:104319. https://doi.org/10.1016/j.catena.2019.104319
- 56. Wang QY, Sun JY, Xu XJ, Yu HW. Distribution and availability of fungicide-derived copper in soil aggregates. J Soils Sediments. 2020;20(2):816–23. https://doi.org/10.1007/s11368-019-02441-0
- 57. Piper CS. Soil and plant analysis: a laboratory manual of methods for the examination of soils and the determination of the inorganic constituents of plants. Bombay: Hans Publishers; 1966.
- 58. Jackson ML, Miller RH, Forkiln RE. Soil chemical analysis Prentice-Hall of India Pvt. & Ltd. New Delhi: 2nd Indian Rep. 1973;128.
- 59. Black CA. Operator variation. Methods of Soil Analysis: Part 1 Physical and Mineralogical Properties, Including Statistics of Measurement and Sampling. 1965;9:50–3. https://doi.org/10.2134/agronmonogr9.1.c4
- 60. Black CA, editor. Methods of soil analysis. Part I. Physical and microbiological properties. Agronomy Monograph No. 9. Madison (WI): American Society of Agronomy, Inc.; 1975. p. 18–25.
- 61. Casida LE Jr, Klein DA, Santoro T. Soil dehydrogenase activity. Soil Sci. 1964;98(6):371–6. https://doi.org/10.1097/00010694-196412000-00004
- 62. McLean EO. Aluminium. In: Black CA, editor. Methods of soil analysis. Part II. Madison (WI): American Society of Agronomy, Inc.; 1965. p. 374–85.
- 63. Brookes PC, Kragt JF, Powlson DS, Jenkinson DS. Chloroform fumigation and the release of soil nitrogen: the effects of fumigation time and temperature. Soil Biol Biochem. 1985;17(6):831–35. https://doi.org/10.1016/0038-0717(85)90143-9
- 64. Tabatabai MA, Bremner JM. Use of p-nitrophenyl phosphate for assay of soil phosphatase activity. Soil Biol Biochem. 1969; 1:301–7. https://doi.org/10.1016/0038-0717(69)90012-1
- 65. Tabatabai, MA, Bremner, JM. Assay of urease activity in soils. Soil Biol Biochem. 1972;4(4):479–87. https://doi.org/10.1016/0038-0717(72)90064-8
- 66. Wedepohl KH. The composition of the continental crust. Geochimica et cosmochimica Acta. 1995;59(7):1217–32. https://doi.org/10.1016/0016-7037(95)00038-2
- 67. Subbiah BV, Asija GL. A rapid procedure for the estimation of available nitrogen in soil. Curr Sci. 1956;25:259–60.
- 68. Kumad MS, Malik RS, Anoop Singh AS, Dahiya IS. Background levels of heavy metals in agricultural soils of the Indo-Gangetic plains of Haryana.1989.
- 69. Dawaki UM, Alhassan J. Irrigation and heavy metals pollution in soil under urban and peri-urban agricultural systems. Int J Pure Appl Sci. 2007;1:37–42.
- 70. Gowd SS, Reddy MR, Govil PK. Assessment of heavy metal contamination in soils at Jajmau (Kanpur) and Unnao industrial areas of the Ganga Plain, Uttar Pradesh, India. J Hazard Mater. 2010;174(1–3):113–21. https://doi.org/10.1016/j.jhazmat.2009.09.024
Downloads
Download data is not yet available.