Research Articles
Vol. 12 No. sp4 (2025): Recent Advances in Agriculture by Young Minds - III
Integrated assessment of soil quality using PCA-derived indices and spatial zonation in a micro-watershed
Department of Agronomy, College of Agriculture, V C Farm, Mandya, University of Agricultural Science, Bangalore 571 405, Karnataka, India
Department of Agronomy, College of Agriculture, V C Farm, Mandya, University of Agricultural Science, Bangalore 571 405, Karnataka, India
Department of Soil Science and Agricultural Chemistry, Water Technology Centre Zonal Agricultural Research Station V C Farm, Mandya, University of Agricultural Science, Bangalore 571 405, Karnataka, India
Department of Agricultural Meteorology, GKVK, University of Agricultural Science, Bangalore 560 065, Karnataka, India
Zonal Agricultural Research Station, V C Farm, Mandya, University of Agricultural Science, Bangalore 571 405, Karnataka, India
Department of Agricultural Engineering, College of Agriculture, V C Farm, Mandya, University of Agricultural Science, Bangalore 571 405, Karnataka, India
Carbon Department, Growindigo Pvt. Ltd., New Delhi 110 020 , India
Abstract
Soil quality assessment is crucial for sustainable land management, integrating physical, chemical and biological soil properties into a single measurable index. This study evaluated soil quality in a micro-watershed using Principal Component Analysis (PCA) and cluster analysis tools to delineate management zones. Sixty three soil samples were collected horizon-wise and analyzed for texture, pH, electrical conductivity, organic carbon, exchangeable cations, Cation Exchange Capacity (CEC) and base saturation (BS %). PCA revealed four key components explaining 90.5 % of total data variability. A Minimum Data Set (MDS) was derived based on strong factor loadings, including sand, silt, clay, base saturation percentage and CEC. The Soil Quality Index (SQI) was computed using standardized z-scores, weighted by each component’s variance contribution, resulting in a comprehensive SQI (CSQI) ranging from -0.48 to 1.18. Approximately 20 % of soils were classified as very good, 40 % as good and the remaining 40 % as fair to very poor. Cluster analysis (k-means and hierarchical) grouped the soils into three fertility zones, with fine-textured, nutrient-rich soils corresponding to the highest CSQI values. Spatial analysis and thematic mapping highlighted that soils with higher clay, CEC and BS % were concentrated in depositional zones and exhibited superior quality, whereas coarse-textured upland soils were nutrient-poor and vulnerable to degradation. These findings underscore the need for site-specific interventions in low-SQI areas, including organic matter addition, nutrient balancing, erosion control and adoption of conservation agriculture practices. In contrast, high-quality zones can maintain current management to sustain productivity. Overall, the integration of PCA-based SQI with GIS spatial modelling proved effective for identifying soil heterogeneity and prioritizing area-specific management strategies, ensuring improved soil resilience and sustainable productivity in the Bankanahalli micro-watershed, characterized predominantly by Alfisols.
References
- 1. Klimkowicz-Pawlas A, Ukalska-Jaruga A, Smreczak B. Soil quality index for agricultural areas under different levels of anthropopressure. Int Agrophys 2019;33(4):455-69. https://doi.org/10.31545/intagr/113349
- 2. Lenka NK, Meena BP, Lal R, Biswas S, Patra AK, Mandal B. Comparing four indexing approaches to define soil quality in an intensively cropped region of Northern India. Front Environ Sci 2022;10:865473. https://doi.org/10.3389/fenvs.2022.865473
- 3. Mukherjee A, Lal R, Zimmerman AR. Comparison of soil quality index using three methods. PLoS ONE 2014;9(8):e105981. https://doi.org/10.1371/journal.pone.0105981
- 4. Celis RAO, Gutiérrez L, Díaz-Zorita M. Conceptual and practical challenges of assessing soil quality: A systematic review. Soil Use Manage 2024. https://doi.org/10.1111/sum.13137
- 5. Kahsay A, Desta B, Tesfaye D. Developing soil quality indices to investigate degradation under varied land use managements in Northern Ethiopia. Heliyon 2025;11(6):e024172167. https://doi.org/10.1016/j.heliyon.2024.e41185
- 6. Maguzu J, Paz-Kagan T, Meitasari D, Mesfin A, Mulat T, Adegbite KI, et al. Developing soil quality indices for predicting site classes in Pinus patula stands in Tanzania. Agric Ecosyst Environ 2024;358:2433330.
- 7. Vasu D, Naorem A, Khasi D, Mamabolo RR, Bouma J, Chang SE, et al. A novel and comprehensive soil quality index integrating morphological, physical, chemical and biological properties. Geoderma 2024;444:116247. https://doi.org/10.1016/j.still.2024.106246
- 8. Hauser E, Chorover J, Cook CW, Markewitz D, Rasmussen C, Richter DD, et al. Integrating decadal and century-scale root development with longer-term soil development to understand terrestrial nutrient cycling. Soil Sci 2023. https://doi.org/10.2139/ssrn.4202049
- 9. Nolan AL. Field and laboratory methods for assessing soil quality across landscapes. In: Lal R, Stewart BA, editors. Soil Quality and Ecosystem Services. CRC Press; 2006:123-35.
- 10. Mohamed KM, Abdel-Fattah MK, Mohamed AY. Quantitative evaluation of soil quality using principal component analysis and clustering approach. J Sustain Agric 2021;13(4):1824. https://doi.org/10.3390/su13041824
- 11. Rousseeuw PJ. Silhouettes: A graphical aid to the interpretation and validation of cluster analysis. J Comput Appl Math 1987;20:53-65. https://doi.org/10.1016/0377-0427(87)90125-7
- 12. Grosjean P, Ibanez F, Etienne M. pastecs: Package for Analysis of Space-Time Ecological Series (version 1.4.2) [computer software]. CRAN 2024.
- 13. Dodge Y. The concise encyclopedia of statistics. Springer 2008.
- 14. Li N, Li Y, Li J, Wu X, Feng J, Wang S, et al. Construction and confirmatory factor analysis of the core competence scale for operating room nurses: A cross-sectional study. BMC Nurs 2020;19:75.
- 15. Parra-González MA, Rodríguez-Valenzuela M. Multivariate analysis for soil quality evaluation: A methodological approach. Environ Monit Assess 2017;189(8):382.
- 16. Menge DNL, Chu PD, Potani NA. Soil quality evaluation based on minimum data set: PCA and field testing. Soil Sci Soc J 2024;88(2):384-96.
- 17. Martín-Sanz J, Cobo JG, et al. Characterizing soil quality using principal component analysis and minimum data set approaches: Case study in Mediterranean agroecosystems. Soil Use Manage 2022;38(1):115-27.
- 18. Doran JW, Parkin TB. Defining and assessing soil quality. In: Lal R, Coleman DC, Bezdicek DF, Stewart BA, editors. Soil Quality for Crop Production and Ecosystem Health. Soil Sci Soc Am Spec Publ 35; 1994:3-21.
- 19. Romano-Armada N, et al. Construction of a combined soil quality indicator to assess impacts of agricultural practices. Sci Total Environ 2019;665:70-8.
- 20. Osman KT, Mohamed HH, Ali SH. Quantitative evaluation of soil quality using principal component analysis: The case study of El Fayoum Depression, Egypt. Sustainability 2022;13(4):1824. https://doi.org/10.3390/su13041824
- 21. NRCS. Guidelines for soil quality assessment. Natural Resources Conservation Service, US Department of Agriculture 2023.
- 22. Abdel-Fattah MK, Mohamed KM. Quantitative evaluation of soil quality using principal component analysis and clustering approach. Sustainability 2021;13(4):1824.
- 23. Larson WE, Pierce FJ. The soil quality concept: Implications for finding and managing soil resources. Soil Sci Soc Am J 1994;58(2):4-10.
- 24. Ferraz GAS. Principal components in the study of soil and plant attributes: Application in agricultural research. Rev Bras Eng Agríc Ambient 2019;23(2):424-31.
- 25. Maione C. A cluster analysis methodology for the categorization of watershed soils. Int J Cluster Sci 2023.
- 26. Aytaç E. Hydrological response unit based k-means clustering: Application in soil and landscape classification. Environ Softw 2020;136:157-65.
- 27. Miruthula S, Swathe M, Nivetha V. Crop yield prediction using clustering algorithms: Applications in precision agriculture. Int J Res Publ Rev 2025;6(9):1024-34.
- 28. Sharma M, Goel S, Elias AA. Predictive modeling of soil profiles for precision agriculture: A case study in safflower cultivation environments. Sci Rep 2025;15:89395. https://doi.org/10.1038/s41598-024-83551-9
- 29. Yadav MBN, Patil PL, Rundan V, Veda Vyas R, Nthebere K. Assessing the spatial variability of soil quality index of Ganjigatti Sub-Watershed using GIS-based geostatistical modeling. Indian J Ecol 2024;51(1):96-103.
- 30. Jalhoum MEM, Abou El-Magd MS, El-Sayed SH, El-Samman H. Multivariate analysis and GIS approaches for modeling soil quality index in arid zones. Sci Rep 2024;14:1762. https://doi.org/10.1016/j.heliyon.2024.e27577
Downloads
Download data is not yet available.