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Plant growth promoting and antagonistic Enterobacter sp. EPR4 from common bean rhizosphere of garhwal himalayan inhibits a soil-borne pathogen Sclerotinia sclerotiorum

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DOI:

https://doi.org/10.14719/pst.1662

Keywords:

Enterobacter sp., Biocontrol, PGPR, Phaseolus vulgaris, Sclerotinia sclerotiorum

Abstract

Plant growth stimulating and antagonistic properties of 7 bacterial isolates of beneficial Enterobacter spp. (EPR1- EPR7) screened from the rhizospheric soil of Phaseolus vulgaris plants growing in Garhwal Himalaya, Uttarakhand, India was studied against soil borne phytopathogen Sclerotinia sclerotiorum causes root rots in various crops. Among the isolates, EPR4 showed 64.8% reduction in colony growth of the fungal pathogen in dual culture. All seven isolates are capable of producing Indole Acetic Acid (IAA), but EPR4 also produced cyanogens, solubilized inorganic and organic phosphate, siderophore, ACC (1-aminocyclopropane-1-carboxylic acid) deamininase, and extracellular enzymes like chitinase which inhibited the phytopathogen. For the EPR4 strain, 16S rRNA gene sequencing was followed by NCBI - BLAST similarity showed the maximum sequence similarity (100%) with the species of Enterobacter (available on NCBI data base), and recognized as Enterobacter sp. EPR4 (GenBank accession number JN225424). The Enterobacter sp. EPR4 has the potential to be used as a biocontrol agent against S. sclerotiorum as well as a good plant growth promoter for common bean and other crops grown in India's Garhwal Himalaya.

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References

United Nations Department of Economic and Social Affairs (UNDESA). World Population Prospects: The 2012 Revision (United Nations, New York); 2013.

Frona D, Szenderák J, Harangi-Rákos M. The challenge of feeding the world. Sustainability. 2019;11(20):5816. https://doi.org/10.3390/su11205816.

Gu Y, Dong K, Geisen S, Yang W, Yan Y, Gu D et al. The effect of microbial inoculant origin on the rhizosphere bacterial community composition and plant growth-promotion, Plant and Soil 2020;452:105-17. https://doi.org/10.1007/s11104-020-04545-w.

Chouyia FE, Romano I, Fechtali T, Fagnano M, Fiorentino N, Visconti D et al. P-Solubilizing Streptomyces roseocinereus MS1B15 with multiple plant growth-promoting traits enhance barley development and regulate rhizosphere microbial population, Frontiers in Plant Science. 2020; 11: 1137. https://doi.org/10.3389/fpls.2020.01137.

Guerrieri MC, Fanfoni E, Fiorini A, Trevisan M, Puglisi E. Isolation and screening of extracellular PGPR from the rhizosphere of tomato plants after long-term reduced tillage and cover crops. Plants (Basel).2020;5: 668. https://doi.org/10.3390/plants9050668.

Rodriguez M, Torres M, Blanco L, Bejar V, Sampedro I, Llamas I. Plant growth-promoting activity and quorum quenching-mediated biocontrol of bacterial phytopathogens by Pseudomonas segetis strain P6. Scientific Reports 2020; 10: 4121. https://doi.org/10.1038/s41598-020-61084-1.

Sultan SM, Dar SA, Dand SA, Sivaraj N. Diversity of common bean in Jammu and Kashmir, India: a DIVA - geographic information system and cluster analysis. Journal of Applied and Natural Science. 2014;6 (1): 226-33. https://doi.org/10.31018/jans.v6i1.406

Kumar P, Dubey RC, Maheshwari DK. Bacillus strains isolated from rhizosphere showed plant growth promoting and antagonistic activity against phytopathogens. Microbiological Research. 2012;167(8):493-99. https://doi.10.1016/j.micres.2012.05.002.

Kumar P, Dubey RC, Maheshwari DK. Park YH. Bajpai VK. Isolation of Plant Growth Promoting Pseudomonas sp. PPR8 from the rhizosphere of Phaseolus vulgaris L. Archives of Biological Sciences. 2016;68(2):363-74. https://doi.10.2298/ABS150701028K.

Saengsanga T. Isolation and characterization of indigenous plant growth-promoting rhizobacteria and their effects on growth at the early stage of thai jasmine rice (Oryza sativa L. KDML105), Arabian Journal for Science and Engineering. 2018;43:3359-69. https://doi.org/10.1007/s13369-017-2999-8.

Sumbul A, Ansari RA, Mahmood RRI. Azotobacter: A potential bio-fertilizer for soil and plant health management. Saudi Journal of Biological Sciences. 2020;27(12):3634-40. https://doi.10.1016/j.sjbs.2020.08.004

Ramesh A, Sharma SK, Sharma MP, Yadav N, Joshi OP. Plant growth-promoting traits in Enterobacter cloacae subsp. dissolvens MDSR9 isolated from soybean rhizosphere and its impact on growth and nutrition of soybean and wheat upon inoculation. Agricultural Research.2014;31:53-66. https://doi.org/10.1007/s40003-014-0100-3.

Khalifa AYZ, Alsyeeh AM, Almalki MA, Saleh FA. Characterization of the plant growth promoting bacterium, Enterobacter cloacae MSR1, isolated from roots of non-nodulating Medicago sativa. Saudi Journal of Biological Sciences. 2016;23:79-86. https://doi.org/10.1016/j.sjbs.2015.06.008.

Li H, Ding X, Wang C, Ke H, Wu Z, Wang Y, Liu H,Guo J. Control of tomato yellow leaf curl virus disease by EnterobacterasburiaeBQ9 as a result of priming plant resistance in tomatoes. Turkish Journal of Biology. 2016; 40: 150-59. https://doi.org/10.3906/biy-1502-12.

Pramanik K, Mitra S, Sarkar A, Soren T, Maiti TK. Characterization of a Cd2þ-resistant plant growth promoting rhizobacterium (Enterobacter sp.) and its effects on rice seedling growth promotion under Cd2þ-stress in vitro.Agriculture and natural resources. 2018; 52: 215-21. https://doi.org/10.1016/j.anres.2018.09.007

Bendaha M E A, Belaouni H A.Tomato growth and resistance promotion by Enterobacter hormaechei subsp. steigerwaltii EB8D, Archives of Phytopathology and Plant Protection. 2019;523 (4):318-32. https://doi.org/10.1080/03235408.2019.1620511.

Bendaha MEA, Belaouni HA. Effect of the endophytic plant growth promoting Enterobacter ludwigii EB4B on tomato growth. Hellenic Plant Protection Journal.2020;13: 54-65. https://doi.org/10.2478/hppj-2020-0006.

Santos RMd, Rigobelo EC. Growth-promoting potential of rhizobacteria isolated from sugarcane. Frontiers in Sustainable Food Systems. 2021; 5: 596269.doi: 10.3389/fsufs.2021.596269.

Chen J, Ullah C, Reichelt M. Beran F, Yang Z, Gershenzon J, Hammerbacher A, Vassão DG. The phytopathogenic fungus Sclerotinia sclerotiorum detoxifies plant glucosinolate hydrolysis products via an isothiocyanate hydrolase. Nature Communications. 2020; 11: 3090. https://doi.org/10.1038/s41467-020-16921-2.

Holt JG, Kreig NR, Sneath PHA, Staley JT, Williams ST. Bergey’s Manual of Determinative Bacteriology. 9th Ed. Baltimore, USA: Williams & Wilkins, 1994.

Sambrook J, Russel D. Molecular Cloning: A Laboratory Manual. NY, USA: Coldspringharbor Laboratory Press, Cold Spring Harbor, 2001.

Lebrazi S, Niehaus K, Bednarz H, Fadil M, Chraibi M, Fikri-Benbrahim K. Screening and optimization of indole-3-acetic acid production and phosphate solubilization by rhizobacterial strains isolated from Acacia cyanophylla root nodules and their effects on its plant growth, Journal of Genetic Engineering and Biotechnology. 2020; 18: 71. https://doi.org/10.1186/s43141-020-00090-2.

Bakker AW, Schippers B. Microbial cyanides production in the rhizosphere in relation to potato yield reduction and Pseudomonas spp. mediated plant growth stimulation. Soil Microbiology and Biochemistry. 1987; 19: 451-57. https://doi.org/10.1016/0038-0717(87)90037-X.

Schwyn B. Neilands JB. Universal chemical assay for the detection and determination of siderophores. Analytical Biochemistry. 1987; 160: 47-56. https://doi.org/10.1016/0003-2697(87)90612-9.

Penrose DM, Glick BR. Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiologia Plantarum. 2003; 118: 10-15. doi: 10.1034/j.1399-3054.2003.00086.x.

Skidmore AM, Dickinson CH. Colony interaction and hyphal interference between Septoria nodorumand phylloplane fungi.Transactions of the British Mycological Society.1976; 66: 57-74. https://doi.org/10.1016/S0007-1536(76)80092-7.

Fischer ER, Hansen BT, Nair V, Hoyt FH, Dorward DW. Scanning electron microscopy, Current Protocols in Microbiology. 2012;2:2. https://doi.org/10.1002/9780471729259.mc02b02s25.

Dunne C, Crowley JJ, Moe?nne-LoccozY, Dowling DN, de Bruijn FJ, O’Gara F. Biological control of Pythium ultimum by Stenotrophomonas maltophilia W81 is mediated by an extracellular proteolytic activity. Microbiology. 1997; 143: 3921-31. https://doi.org/10.1099/00221287-143-12-3921.

Berger LR, Reynolds DM. Colloidal chitin preparation,Methods in Enzymology. 1988; 161: 140-42.

Dickman MB, Mitra A. Arabidopsis thaliana as a model for studying Sclerotinia sclerotiorum pathogenesis. Physiological and Molecular Plant Pathology. 1992;41:255-63. https://doi.org/10.1016/0885-5765(92)90025-Q.

Park JM, Radhakrishnan R, Kang SM, Lee IJ. IAA producing Enterobacter sp. I-3 as a potent bio-herbicide candidate for weed control: a special reference with lettuce growth inhibition, Indian Journal of Microbiology. 2015; 55 (2): 207-12. https://doi.org/10.1007/s12088-015-0515-y.

Mahdi I, Fahsi N, Hafidi M, Allaoui A, Biskri L. Plant Growth Enhancement using rhizospheric halotolerant phosphate solubilizing bacterium Bacillus licheniformis QA1 and Enterobacter asburiae QF11 isolated from Chenopodium quinoa Willd, Microorganisms. 2020; 248 (6): 948. https://doi.org/10.3390/microorganisms8060948.

Lin L, Li Z, Hu C, Zhang X, Chang S, Yang L, Li Y, An Q. Plant growth-promoting nitrogen-fixing enterobacteria are in association with sugarcane plants growing in Guangxi, China. Microbes and Environments. 2012; 27 (4): 391-98. https://doi.org/10.1264/jsme2.me11275.

Mendoza-Arroyo GE, Chan-Bacab MJ, Aguila-Ramírez RN, Ortega-Morales BO, Canché Solís RE, Chab-Ruiz AO et al. Inorganic phosphate solubilization by a novel isolated bacterial strain Enterobacter sp. itcb-09 and its application potential as biofertilizer. Agriculture. 2020; 10: 383. https://doi.org/10.3390/agriculture10090383.

Borham A, Belal E, Metwaly M, El-Gremy Sh.Phosphate Solubilization by Enterobacter cloacae and its impact on growth and yield of wheat plants. Journal of Sustainable Agricultural Sciences. 2017;43 (2): 89 -103. https://doi.org/10.21608/jsas.2017.1035.1004.

Danish S, Zafar-Ul-Hye M, Mohsin F, Hussain M. ACC-deaminase producing plant growth promoting rhizobacteria and biochar mitigate adverse effects of drought stress on maize growth. PLoS One. 2020;15 (4): e0230615.https://doi.org/10.1371/journal.pone.0230615

Gupta S, Pandey S. ACC deaminase producing bacteria with multifarious plant growth promoting traits alleviates salinity stress in french bean (Phaseolus vulgaris) plants. Frontiers in Microbiology. 2019;10:1506. https://doi.org/10.3389/fmicb.2019.01506.

Patten CL, Glick BR. Role of Pseudomonas putida Indole-acetic acid in development of the host plant root system, Appl. Env. Microbiol. 2002; 68 (8): 3795-801. https://doi.org/10.1128/aem.68.8.3795-3801.2002.

Veliz EA, Hidalgo PM, Hirsch AM. Chitinase-producing bacteria and their role in biocontrol. AIMS Microbiology. 2017; 3 (3): 689-705. https://doi.org/10.3934/microbiol.2017.3.689.

Dahiya N, Tewari R, Tiwari RP, Hoondal GS. Production of an antifungal chitinase from Enterobacter sp. NRG4 and its application in protoplast production. World Journal of Microbiology and Biotechnology. 2005;21:1611-16. https://doi.org/10.1007/s11274-005-8343-6.

Ali S, Hameed S, Shahid M, Iqbal M., Lazarovits George, Imran A. Functional characterization of potential PGPR exhibiting broad-spectrum antifungal activity. Microbiological Research. 2020; 232: 126389. https://doi.org/10.1016/j.micres.2019.126389.

Published

20-08-2022

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1.
Kumar P, Dubey RC, Rai AK. Plant growth promoting and antagonistic Enterobacter sp. EPR4 from common bean rhizosphere of garhwal himalayan inhibits a soil-borne pathogen Sclerotinia sclerotiorum. Plant Sci. Today [Internet]. 2022 Aug. 20 [cited 2024 Dec. 22];. Available from: https://horizonepublishing.com/journals/index.php/PST/article/view/1662

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