Skip to main navigation menu Skip to main content Skip to site footer

Research Articles

Vol. 10 No. sp1 (2023)

Morphological, Biochemical and Genetic Variation of Rice (Oryza sativa L.) Genotypes to Vegetative Stage Salinity Stress

DOI
https://doi.org/10.14719/pst.2023
Submitted
11 August 2022
Published
12-05-2023 — Updated on 28-05-2023
Versions

Abstract

Salinity is one of the most serious issues in rice cultivation and production. Salt stress significantly reduced seedling growth performance of rice. This research was conducted to study the effects of vegetative stage salinity stress on morphological, biochemical, molecular and genetic variation of 12 rice genotypes as well as 2 check varieties, MR297 (susceptible) and Pokkali (tolerant). The experiment was arranged in a split-plot design with 3 replications. Normal freshwater at 0 dS m-1 (L1), saline water at 6 dS m-1 (L2) and saline water at 12 dS m-1 (L3) were the main plot and rice genotypes were the sub-plot. In general, morphological and biochemical traits of all genotypes showed an overall reduction of about 47.41% in L3 as compared to L1 except for the tolerant check, Pokkali. The genetics and correlation analysis indicated that plant height, leaf size and standard evaluation system (SES) score might be used as a selection criterion in developing salt tolerant rice. The multivariate analysis revealed that a Malaysian landraces, Jarom Mas was clustered together with Pokkali as tolerant genotype. Screening using tightly linked Simple Sequence Repeat (SSR) markers (RM1287, RM10748, RM493) of salinity tolerant QTL, Saltol indicated that this QTL was absence in Jarom Mas. This finding might indicate the presence of other QTL associated with salinity tolerance in Jarom Mas. Further study on identifying the speculated QTL may be conducted to confirm this postulation.

References

  1. Waziri A, Kumar, Purty R. Saltol QTL and their role in salinity tolerance in rice. Austin Journal of Biotechnology and Bioengineering. 2016;3(3):1067.
  2. Ansari MR, Shaheen T, Bukhari SA, Husnain T. Genetic improvement of rice for biotic and abiotic stress tolerance. Turkish Journal of Botany. 2015;39(6):911-19. https://doi.org/10.3906/bot-1503-47
  3. Bhatt T, Sharma A, Puri S, Minhas AP. Salt tolerance mechanisms and approaches: Future scope of halotolerant genes and rice landraces. Rice Science. 2020;27(5):368-83. https://doi.org/10.1016/j.rsci.2020.03.002
  4. Soltabayeva A, Ongaltay A, Omondi JO, Srivastava S. Morphological, physiological and molecular markers for salt-stressed plants. Plants. 2021;10(2):1-18. https://doi.org/10.3390/plants10020243
  5. Kakar N, Jumaa SH, Redoña ED, Warburton ML, Reddy KR. Evaluating rice for salinity using pot-culture provides a systematic tolerance assessment at the seedling stage. Rice. 2019;12:1-14. https://doi.org/10.1186/s12284-019-0317-7
  6. Gupta B, Huang B. Mechanism of salinity tolerance in plants: Physiological, biochemical and molecular characterization. International Journal of Genomics. 2014;1-18. https://doi.org/10.1155/2014/701596
  7. Reddy INBL, Kim BK, Yoon IS, Kim KH, Kwon TR, Naga I, Lingeswara B, Im BKY, Oon ISY, Im KHK, Won TRK. Salt tolerance in rice: Focus on mechanisms and approaches. Rice Science. 2017;24(3):123-44. https://doi.org/10.1016/j.rsci.2016.09.004
  8. Singh MP, Singh DK, Rai M. Assessment of growth, physiological and biochemical parameters and activities of antioxidative enzymes in salinity tolerant and sensitive basmati rice varieties. Journal of Agronomy and Crop Science. 2007;193(6):398-412. https://doi.org/10.1111/j.1439-037X.2007.00267.x
  9. Senanayake RMNH, Herath HMVG, Wickramesinghe IP, Udawela UAKS, Sirisena DN. Phenotypic screening of rice varieties for tolerant to salt stress at seed germination, seedling and maturity stages. Tropical Agricultural Research. 2017;29(1):90. https://doi.org/10.4038/tar.v29i1.8300
  10. Amirjani M. Effect of salinity stress on growth, sugar content, pigments and enzyme activity of rice. International Journal of Botany. 2011;7(1):73-81. https://doi.org/10.3923/ijb.2011.73.81
  11. Horie T, Karahara I, Katsuhara M. Salinity tolerance mechanisms in glycophytes: An overview with the central focus on rice plants. The Rice Journal. 2012;5(11):1-18. https://doi.org/10.1186/1939-8433-5-11
  12. Khanam T, Akhtar N, Halim M, Hossain F. Effect of irrigation salinity on the growth and yield of two Aus rice cultivars of Bangladesh. Jahangirnagar University Journal of Biological Sciences. 2018;7(2):1-12. https://doi.org/10.3329/jujbs.v7i2.40742
  13. Joseph E, Radhakrishnan V, Mohanan K. A study on the accumulation of proline - an osmoprotectant Amino Acid under salt stress in some native rice cultivars of North Kerala, India. Universal Journal of Agricultural Research. 2015;3(1):15-22. https://doi.org/10.13189/ujar.2015.030104
  14. Stephen K, Beena R, Neethu M, Shanija S. Identification of heat-tolerant rice genotypes and their molecular characterisation using SSR markers. Plant Science Today. 2022; 9(4):802-13. https://doi.org/10.14719/pst.1639
  15. Kumari R, Kumar P, Sharma VK, Kumar H. Seedling stage salt stress response specific characterization of genetic polymorphism and validation of SSR markers in rice. Physiology and Molecular Biology of Plants. 2019;25(2):407-19. https://doi.org/10.1007/s12298-018-0623-3
  16. Hoang TML, Tran TN, Nguyen TKT, Williams B, Wurm P, Bellairs S, Mundree S. Improvement of salinity stress tolerance in rice: Challenges and opportunities. Agronomy. 2016;6(54):1-23. https://doi.org/10.3390/agronomy6040054
  17. Tariq R, Ali J, Arif M. Morphological screening and Saltol region based SSR markers analysis of rice (Oryza sativa) genotypes for salinity tolerance at seedling stage. International Journal of Agriculture and Biology. 2019;21(1):25-33.
  18. Sohrabi M, Rafii MY, Hanafi MM, Akmar ASN, Latif MA. Genetic diversity of upland rice germplasm in Malaysia based on quantitative traits. The Scientific World Journal. 2012;1-9. https://doi.org/10.1100/2012/416291
  19. Muti SAA, Hoque MI, Islam MM, Siddique MA, Islam MS. Morpho-molecular characterization and screening of rice (Oryza sativa L.) genotypes for salinity tolerance at seedling stage. SAARC Journal of Agriculture. 2020;18(2):1-15. https://doi.org/10.3329/sja.v18i2.51104
  20. Sazali SA, Nordin MS, Shamsudin NAA, Shahari R, Yusop MR, Ab Razak MSF, Kamaruzaman R, Salleh MS. Susceptibility of Malaysian rice (Oryza sativa L.) cultivar to saline water submergence based on the morphological traits. Journal of Agrobiotechnology. 2021;12(2):47-55. https://doi.org/10.37231/jab.2021.12.2.257
  21. Salleh MS, Malek RA, Shahari R, Nordin MS. Screening rice (Oryza sativa L.) genotypes for resistance against drought. Water Conservation and Management. 2020;4(2):68-72. https://doi.org/10.26480/wcm.02.2020.78.82
  22. Salleh MS, Nordin MS, Bahagia M, Ghaffar AB, Shahari R, Zainuddin Z et al. Effect of pre-anthesis drought stress on yield components and seed quality of rice (Oryza sativa L.). Malaysian Applied Biology. 2018;47(5):149-55.
  23. Salleh MS, Nordin MS, Puteh AB. Germination performance and biochemical changes under drought stress of primed rice seeds. Seed Science and Technology. 2020;48(3):333-43. https://doi.org/10.15258/sst.2020.48.3.02
  24. Uddin Kamal Md, Dandan Mohd, Hj Alidin Ame, Abdul Shukor Juraimi, Ali Qurban RKSM. Salinity effects on germination and growth of Malaysian weedy rice biotypes and cultivated rice. International Journal of Biosciences. 2016;9(3):122-28. https://doi.org/10.12692/ijb/9.3.122-128
  25. Porra RJ, Thompson WA, Kriedemann PE. Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. In: BBA - Bioenergetics. Elsevier Science. 1989; p. 384-94. https://doi.org/10.1016/S0005-2728(89)80347-0
  26. Bates LS, Waldren RP, Teare ID. Rapid determination of free proline for water-stress studies. Plant and Soil. 1973;39:205-07. https://doi.org/10.1007/BF00018060
  27. Noorzuraini S, Abd B, Shahril M, Bin F, Razak A. Identification of drought tolerant among MARDI rice varieties based on morpho-agronomic traits and drought grain yield QTLs. International Journal of Current Microbiology and Applied Sciences. 2021;10(08):471-93. https://doi.org/10.20546/ijcmas.2021.1008.058
  28. Razak SA, Kamaruzaman R, Amri S, Ismail SN. Genetic diversity of released Malaysian rice varieties based on single nucleotide polymorphism markers. Czech Journal of Genetics and Plant Breeding. 2020;1:1-9. https://doi.org/10.17221/58/2019-CJGPB
  29. Burton GW. Quantitative inheritance in grasses. In: Proceedings of the International Grassland Congress. 1952;277-83.
  30. Haque A, Rafii MY, Yusoff MM, Ali NS, Yusuff O, Datta DR, Anisuzzaman M, Ikbal MF. Advanced breeding strategies and future perspectives of salinity tolerance in rice. 2021;1-23. https://doi.org/10.3390/agronomy11081631
  31. Haque MS, Hasanuzzaman Md, Rahman MdT, Islam N, Begum SN, Yasmin S. Hydroponic and in vitro screening of wheat varieties for salt-tolerance. Plant Science Today. 2022;9(4):844-54. https://doi.org/10.14719/pst.1686
  32. Puteh A, Mondal M. Salinity effect on dry mass partitioning in different plant parts and ion uptake in leaves of rice mutants. Journal of Environmental Science and Natural Resources. 2015;6(1):239-45. https://doi.org/10.3329/jesnr.v6i1.22073
  33. Islam MR, Bhuiyan MAR, Prasad B, Rashid MH, Quddus MA. Salinity effect on yield and component characters in rapeseed and mustard varieties. Journal of Biological Sciences. 2001;1(9):840-52. https://doi.org/10.3923/jbs.2001.840.842
  34. Hussain S, Zhang J hua, Zhong C, Zhi L feng, Cao X chuang, Yu S miao, James AB, Hu JJ, Jin QY. Effects of salt stress on rice growth, development characteristics and the regulating ways: A review. Journal of Integrative Agriculture. 2017;16(11):2357-74. https://doi.org/10.1016/S2095-3119(16)61608-8
  35. Negrao S, Courtois B, Ahmadi N, Abreu IA, Saibo N, Oliveira MM. Recent updates on salinity stress in rice: from physiological to molecular response. Critical Reviews in Plant Sciences. 2011;30:329-77. https://doi.org/10.1080/07352689.2011.587725
  36. Safitri H, Purwoko BS, Dewi IS, Ardie SW. Salinity tolerance of several rice genotypes at seedling stage. Indonesian Journal of Agricultural Science. 2018;18(2):63. https://doi.org/10.21082/ijas.v18n2.2017.p63-68
  37. Hakim MA, Juraimi AS, Hanafi MM, Ismail MR, Rafii MY, Islam MM, Selamat A. The effect of salinity on growth, ion accumulation and yield of rice varieties. Journal of Animal and Plant Sciences. 2014;24(3):874-85. https://doi.org/10.1155/2014/208584
  38. Wankhade SD, Cornejo MJ, Mateu-Andrés I, Sanz A. Morpho-physiological variations in response to NaCl stress during vegetative and reproductive development of rice. Acta Physiologiae Plantarum. 2013;35(2):323-33. https://doi.org/10.1007/s11738-012-1075-y
  39. Alamgir ANM, Ali MY. Effect of NaCl salinity on leaf characters and physiological growth attributes of different genotypes of rice (Oryza sativa L.). Bangladesh Journal of Botany. 2006;35(2):99-107.
  40. Jamil M, Bashir S, Anwar S, Bibi S, Bangash A, Ullah F et al. Effect of salinity on physiological and biochemical characteristics of different varieties of rice. Pakistan Journal of Botany. 2012;44(SPL.ISS.1):7-13.
  41. Ali Y, Aslam Z, Ashraf M, Tahir G. Effect of salinity on chlorophyll concentration, leaf area, yield and yield components of rice genotypes grown under saline environment. International Journal of Environmental Science and Technology. 2004;1(3):221-25. https://doi.org/10.1007/BF03325836
  42. Polash MAS, Sakil MdA, Tahjib-Ul-Arif Md, Hossain MdA. Effect of salinity on osmolytes and relative water content of selected rice genotypes. Tropical Plant Research. 2018;5(2):227-32. https://doi.org/10.22271/tpr.2018.v5.i2.029
  43. Singh M, Kumar J, Singh VP, Prasad SM. Plant tolerance mechanism against salt stress: the nutrient management approach. Biochemistry and Pharmacology. 2014;3(5):e165. https://doi.org/10.4172/2167-0501.1000e165
  44. Gerona MEB, Deocampo MP, Egdane JA, Ismail AM, Dionisio-Sese ML. Physiological responses of contrasting rice genotypes to salt stress at reproductive stage. Rice Science. 2019;26(4):207-19. https://doi.org/10.1016/j.rsci.2019.05.001
  45. Chunthaburee S, Dongsansuk A, Sanitchon J, Theerakulpisut P, Pattanagul W. Physiological and biochemical parameters for evaluation and clustering of rice cultivars differing in salt tolerance at seedling stage. Saudi Journal of Biological Science. 2015;23(4):467-77. https://doi.org/10.1016/j.sjbs.2015.05.013
  46. Thomson MJ, de Ocampo M, Egdane J, Rahman MA, Sajise AG, Adorada DL et al. Characterizing the Saltol quantitative trait locus for salinity tolerance in rice. Rice. 2010;3(2-3):148-60. https://doi.org/10.1007/s12284-010-9053-8
  47. Ahmed S, Anik TR, Islam A, Uddin I, Haque MS. Screening of some rice (Oryza sativa L.) genotypes for salinity tolerance using morphological and molecular markers. Biosciences Biotechnology Research Asia. 2019;16(2):377-90. https://doi.org/10.13005/bbra/2753
  48. Thu TTP, Yasui H, Yamakawa T. Effects of salt stress on plant growth characteristics and mineral content in diverse rice genotypes. Soil Science and Plant Nutrition. 2017;63(3):264-73. https://doi.org/10.1080/00380768.2017.1323672
  49. Puvanitha S, Mahendran S. Effect of salinity on plant height, shoot and root dry weight of selected rice cultivars. Scholars Journal of Agriculture and Veterinary Sciences. 2017;4(4):126-31.
  50. Teklu DH, Kebede SA, Gebremichael DE. Assessment of genetic variability, genetic advance, correlation and path analysis for morphological traits in sesame genotypes. Asian Journal of Agricultural Research. 2014;8(4):181-94. https://doi.org/10.3923/ajar.2014.181.194
  51. Tuhina-Khatun M, Hanafi MM, Rafii Yusop M, Wong MY, Salleh FM, Ferdous J. Genetic variation, heritability and diversity analysis of upland rice (Oryza sativa L.) genotypes based on quantitative traits. Biomed Research International. 2015;1-8. https://doi.org/10.1155/2015/290861
  52. Mahmood T, Turner M, Stoddard FL, Javed MA. Genetic analysis of quantitative traits in rice (Oryza sativa L.) exposed to salinity. Crop and Pasture Science. 2004;55(11):73-81. https://doi.org/10.1071/AR03200
  53. Adhikari BN, Joshi BP, Shrestha J, Bhatta NR. Genetic variability, heritability, genetic advance and correlation among yield and yield components of rice (Oryza sativa L.). Journal of Agriculture and Natural Resources. 2018;1(1):149-60. https://doi.org/10.3126/janr.v1i1.22230
  54. Akinola TF, Odiyi AC, Fayeun LS, Ohunakin AO. Genetic variability and genetic diversity of 13 upland rice genotypes for agronomic traits and nutritional qualities. Journal of Agricultural Science and Botany. 2019;03(01):6-11. https://doi.org/10.35841/2591-7897.3.1.6-11

Downloads

Download data is not yet available.