Exploring rice genotypes for anaerobic germination: Towards sustainable direct seeding
DOI:
https://doi.org/10.14719/pst.3575Keywords:
anaerobic germination, cluster analysis, correlation, principal component analysis, variabilityAbstract
Direct-seeded rice (DSR) production is the primary focus of this study, which explores the diversity of rice genotypes concerning their ability to withstand anaerobic germination conditions. Using advanced statistical analysis, a total of 250 rice cultivars were assessed for several anaerobic germination attributes. Significant variability was observed among genotypes for key traits including germination % (ARC14855, AG 387), shoot length and seedling dry weight, indicating potential donors for anaerobic germination tolerance. Trait association analysis, variability analysis, principal component analysis and cluster analysis were employed to uncover the genetic and phenotypic factors influencing anaerobic germination tolerance. The genotypes of cluster III could be used as donors for anaerobic germination studies, as the genotypes have revealed high average values for all the traits. The findings underscore the importance of genetic variability and heritability in breeding resilient rice varieties suited for DSR cultivation, offering valuable insights for enhancing rice cultivation practices in the face of challenges such as water scarcity and labour shortages. To improve the sustainability and productivity of paddy production systems, this research advances rice breeding procedures that aim to create varieties tolerant to anaerobic conditions.
Downloads
References
Rauf M, Choi YM, Lee S, Lee MC, Oh S, Hyun DY. Evaluation of anaerobic germinability in various rice subpopulations: identifying genotypes suitable for direct-seeded rice cultivation. Euphytica. 2019;215:1-15. https://doi.org/10.1007/s10681-019-2341-5
Kuya N, Sun J, Iijima K, Venuprasad R, Yamamoto T. Novel method for evaluation of anaerobic germination in rice and its application to diverse genetic collections. Breed Sci. 2019;69(4):633-39. https://doi.org/10.1270/jsbbs.19003
Farooq M, Siddique KHM, Rehman H, Aziz T, Lee DJ, Wahid A. Rice direct seeding: Experiences, challenges and opportunities. Soil Tillage Res. 2011;111(2):87-98. https://doi.org/10.1016/j.still.2010.10.008
Septiningsih EM, Ignacio JCI, Sendon PMD, Sanchez DL, Ismail AM, Mackill DJ. QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red. Theor Appl Genet. 2013;126:1357-66. https://doi.org/10.1007/s00122-013-2057-1
Miro B, Ismail AM. Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.). Vol. 4, Frontiers in Plant Science. Frontiers Research Foundation; 2013. https://doi.org/10.3389/fpls.2013.00269
Ghosal S, Casal C, Quilloy FA, Septiningsih EM, Mendioro MS, Dixit S. Deciphering genetics underlying stable anaerobic germination in rice: Phenotyping, QTL identification and interaction analysis. Rice. 2019;12(1). https://doi.org/10.1186/s12284-019-0305-y
Sandhu N, Yadav S, Cruz MTS, Kumar A. Developing climate-resilient, direct-seeded, adapted multiple-stress-tolerant rice applying genomics-assisted breeding. Front Plant Sci. 2021;12:637488. https://doi.org/10.3389/fpls.2021.637488
Hsu SK, Tung CW. Genetic mapping of anaerobic germination-associated QTLs controlling coleoptile elongation in rice. Rice. 2015;8:1-12. https://doi.org/10.1186/s12284-015-0072-3
Nghi KN, Tondelli A, Valè G, Tagliani A, Marè C, Perata P et al. Dissection of coleoptile elongation in japonica rice under submergence through integrated genome-wide association mapping and transcriptional analyses. Plant Cell Environ. 2019;42(6):1832-46. https://doi.org/10.1111/pce.13540
Agbeleye OA, Olubiyi MR, Ehirim BO, Shittu AO, Jolayemi OL, Adetimirin VO et al. Screening African rice (O. glaberrima Steud.) for tolerance to abiotic stress. III. flooding. SABRAO J Breed Genet. 2019;51(2).
Darko Asante M, Ipinyomi SO, Abe A, Adjah KL, Aculey P, Kwame Bam R et al. Genetic variability for and tolerance to anaerobic germination in rice (Oryza sativa L.). J Crop Improv. 2021;35(6):832-47. https://doi.org/10.1080/15427528.2021.1884631
Travis AJ, Norton GJ, Datta S, Sarma R, Dasgupta T, Savio FL et al. Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice. 2015;8:1-9. https://doi.org/10.1186/s12284-015-0068-z
Norton GJ, Travis AJ, Douglas A, Fairley S, Alves EDP, Ruang-areerate P et al. Genome-wide association mapping of grain and straw biomass traits in the rice Bengal and Assam aus panel (baap) grown under alternate wetting and drying and permanently flooded irrigation. Front Plant Sci. 2018 Sep;9. https://doi.org/10.3389/fpls.2018.01223
Abdul-Baki AA, Anderson JD. Vigor determination in soybean seed by multiple criteria 1. Crop Sci. 1973;13(6):630-33. https://doi.org/10.2135/cropsci1973.0011183X001300060013x
Barik J, Kumar V, Lenka SK, Panda D. Genetic potentiality of lowland indigenous indica rice (Oryza sativa L.) landraces to anaerobic germination potential. Plant Physiol Reports. 2019;24:249-61. https://doi.org/10.1007/s40502-019-00441-3
Ray S, Vijayan J, Sarkar RK. Germination stage oxygen deficiency (GSOD): An emerging stress in the era of changing trends in climate and rice cultivation practice. Front Plant Sci. 2016;7:192116. https://doi.org/10.3389/fpls.2016.00671
Partheeban C, Srividhya S, Raveendran M, Vijayalakshmi D. Designing new screening methods and physiological dissection of anaerobic stress tolerance in rice. Int J Curr Microbiol Appl Sci. 2017;6(5):580-90. https://doi.org/10.20546/ijcmas.2017.605.067
Ismail AM, Ella ES, Vergara GV, Mackill DJ. Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa). Ann Bot. 2009;103(2):197-209. https://doi.org/10.1093/aob/mcn211
Hirano H, Watanabe T, Fukuda M, Fukao T. The impact of carbohydrate management on coleoptile elongation in anaerobically germinating seeds of rice (Oryza sativa L.) under light and dark cycles. Plants. 2023;12(7):1565. https://doi.org/10.3390/plants12071565
Singh Y, Singh AK, Sharma N, Nehal N. Effect of anaerobic condition on germination and seedling growth in different rice cultivars. J Pharmacogn Phytochem. 2018;7(2S):166-68.
Roy SC, Shil P. Assessment of genetic heritability in rice breeding lines based on morphological traits and caryopsis ultrastructure. Sci Rep. 2020;10(1):7830. https://doi.org/10.1038/s41598-020-63976-8
Ajmera S, Kumar SS, Ravindrababu V. Evaluation of genetic variability, heritability and genetic advance for yield and yield components in rice genotypes. Int J Curr Microbiol Appl Sci. 2017;6(10):1657-64. https://doi.org/10.20546/ijcmas.2017.610.200
Adhikari BN, Joshi BP, Shrestha J, Bhatta NR. Genetic variability, heritability, genetic advance and correlation among yield and yield components of rice (Oryza sativa L.). J Agric Nat Resour. 2018;1(1):149-60. https://doi.org/10.3126/janr.v1i1.22230
Demeke B, Dejene T, Abebe D. Genetic variability, heritability and genetic advance of morphological, yield related and quality traits in upland rice (Oryza Sativa L.) genotypes at Pawe, Northwestern Ethiopia. Cogent Food Agric. 2023;9(1):2157099. https://doi.org/10.1080/23311932.2022.2157099
Sudeepthi K, Srinivas T, Ravi Kumar B, Jyothula DPB, Nafeez Umar SK. Principal component analysis for anaerobic germination traits in rice (Oryza sativa L.). IJCS. 2020;8(1):1977-82. https://doi.org/10.22271/chemi.2020.v8.i1ac.8555
Ravikanth B, Satyanarayana PV, Chamundeswari N, Rani AY, Rao SV, Babu RD. Genetic variability studies on agronomic and physiological traits suitable for direct seeding in rice (Oryza sativa L.). Andhra Agri J. 2018;65(2):315-19.
Srilakshmi P, Chamundeswari N, Ahamed LM, Rao SV. Assessment of genetic variability studies in wet direct sown rice. Andhra Agri J. 2018;65(3):555-60.
Shrestha J, Subedi S, Kushwaha UKS, Maharjan B. Evaluation of growth and yield traits in rice genotypes using multivariate analysis. Heliyon. 2021;7(9). https://doi.org/10.1016/j.heliyon.2021.e07940
Yadav SK, Suresh BG, Pandey P, Kumar B. Assessment of genetic variability, correlation and path association in rice (Oryza sativa L.). J Biol Sci. 2010;18(0):1-8. https://doi.org/10.3329/jbs.v18i0.8767
Chakma SP, Huq H, Mahmud F, Husna A. Genetic diversity analysis in rice (Oryza sativa L.). 2012; https://doi.org/10.3329/bjpbg.v25i1.17010
Anandan A, Eswaran R, Prakash M. Diversity in rice genotypes under salt affected soil based on multivariate analysis. 2011.
Downloads
Published
Versions
- 01-07-2024 (2)
- 10-06-2024 (1)
How to Cite
Issue
Section
License
Copyright (c) 2024 C Vijaya Kumar Reddy, Ranjith. P, Siddharth Panda, Manasi Dash, Anandan A, Lenka D, Samal. K.C, Panda. R.K
This work is licensed under a Creative Commons Attribution 4.0 International License.
Copyright and Licence details of published articles
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
Open Access Policy
Plant Science Today is an open access journal. There is no registration required to read any article. All published articles are distributed under the terms of the Creative Commons Attribution License (CC Attribution 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited (https://creativecommons.org/licenses/by/4.0/). Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).