Principal Component Analysis in rice (Oryza sativa L.) varieties for three seasons in Annamalai Nagar, an east coast region of Tamil Nadu

Abstract

Principal component analysis (PCA) was used to assess genetic variability and identify key yield-contributing traits among 50 rice genotypes evaluated over three seasons under saline conditions. The study aimed to select promising donor lines for developing salt-tolerant, high-yielding cultivars suitable for coastal regions. PCA identified three principal components (PCs) that explained 73.19%, 70.34%, and 64.81% of the total genetic variation in seasons 1, 2 and 3, respectively. Key plant attributes, such as grain yield per plant, panicle grain density, total tiller number, and productive tiller count, showed significant positive associations with PC1 across various growth stages, underscoring their crucial role in explaining the genetic diversity among the genotypes. Plant height, panicle length, and hundred-grain weight also emerged as major contributors to variation. The PCA biplots consistently demonstrated positive correlations between grain yield and traits like panicle length, hundred-grain weight, and tillering ability. In contrast, days to 50% flowering exhibited a negative association with yield. Genotypes G10, G49, G36, G41, G9, G4, G22, and G21 displayed favourable combinations of grain yield per plant, identifying them as potential donor lines for breeding programs aimed at improving rice yield and associated agronomic traits. This comprehensive PCA analysis highlights the effectiveness of the approach in capturing genotypic diversity and guiding the selection of promising germplasm for targeted trait improvement in rice.