A study involving fifty rice germplasm lines was conducted to investigate the effect of variable temperature and relative humidity (30 ± 2 °C for 90 days, followed by 50 ± 2 °C for two days at 60–70 % relative humidity (RH)) on seed longevity traits. The results confirmed a sharp decline in germination percentage (GP), speed of germination (SOG), seedling length (SL) and seed vigour index-I (SV-I) when compared to the quality of freshly harvested ones. The comparative analysis showed a significant positive correlation between GP and SOG (0.95) and between GP and SV-I (0.87). The fifty genotypes were grouped into three clusters, based on the similarities of behaviour under the treatment. The principal component analysis (PCA) also confirmed the grouping of the genotypes based on the seed quality traits under variable temperature treatments. The traits such as GP and SV-I were found highly affected on storage of seed at ambient temperature (30 ± 2 °C) followed by a sudden increase in temperature (50 ± 2 °C). Genotypes such as MDU-5, Manavari, Radhabati and PMK2 have showed least decrease in seed quality traits under variable temperature treatment. These germplasm lines could be used as suitable donor for development of climate resilient varieties which can ensure high-quality seed storage policies in future.