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Research Articles

Vol. 13 No. 3 (2026)

First molecular evidence of mixed infection of mungbean yellow mosaic India virus and cowpea mild mottle virus in soybean from India

DOI
https://doi.org/10.14719/pst.12816
Submitted
18 November 2025
Published
13-05-2026 — Updated on 02-07-2026
Versions

Abstract

Soybean (Glycine max L.) is an important oilseed and protein-rich legume crop widely cultivated for food, feed and industrial uses. However, viral diseases pose a major constraint to soybean production, leading to significant yield losses. Accurate molecular identification of viral pathogens is essential for understanding disease epidemiology and developing effective management strategies. During field surveys conducted in 2022–2023 across soybean-growing regions of Assam, North-East India, soybean plants exhibiting mosaic, mottling and leaf deformation symptoms were frequently observed. Symptomatic samples were collected and subjected to molecular detection using coat protein gene-specific primers for mungbean yellow mosaic India virus (MYMIV; genus Begomovirus) and degenerate primers targeting Carlaviruses. Polymerase chain reaction (PCR) amplification revealed the presence of both MYMIV and cowpea mild mottle virus (CPMMV) either as single infections or in mixed infections. Sequence analysis and phylogenetic reconstruction further confirmed the identity of MYMIV and CPMMV isolates associated with symptomatic soybean plants. To our knowledge, this study provides the first molecular evidence of MYMIV and CPMMV co-infection in soybean from Assam, North-East India. The occurrence of mixed infection highlights potential epidemiological implications and underscores the need for continuous virus surveillance and integrated disease management strategies to safeguard soybean production in the region.

References

  1. 1. Dupare BU, Billore SD, Joshi OP, Husain SM. Origin, domestication, introduction and success of soybean in India. Asian Agri Hist. 2008;12(3):179–95.
  2. 2. Volkova E, Smolyaninova N. Analysis of world trends in soybean production. In: BIO Web Conf. 2024;141:01026. https://doi.org/10.1051/bioconf/202414101026
  3. 3. Gupta T, Yadav N, Dhir S, Srivastava A, Raj SK. Biochemical alterations in soybean (Glycine max) infected with mungbean yellow mosaic India virus in Lalitpur district, Bundelkhand region of India. Arch Phytopathol Plant Prot. 2022;55(1):1–15. https://doi.org/10.1080/03235408.2022.2081773
  4. 4. Hill JH, Whitham SA. Control of virus diseases in soybeans. Adv Virus Res. 2014;90:355–90. https://doi.org/10.1016/B978-0-12-801246-8.00007-X
  5. 5. Usharani KS, Surendranath B, Haq OMI, Malathi VG. Yellow mosaic virus infecting soybean in Northern India is distinct from the species infecting soybean in Southern and Western India. Curr Sci. 2004;86:845–50.
  6. 6. Karthikeyan AS, Vanitharani R, Balaji V, Anuradha S, Thillaichidambaram P, Shivaprasad PV, et al. Analysis of an isolate of mungbean yellow mosaic virus (MYMV) with a highly variable DNA B component. Arch Virol. 2004;149:1643–52. https://doi.org/10.1007/s00705-004-0313-z
  7. 7. Varma A, Malathi VG. Emerging geminivirus problems: a serious threat to crop production. Ann Appl Biol. 2003;142(2):145–64. https://doi.org/10.1111/j.1744-7348.2003.tb00240.x
  8. 8. Hull R. Mathew’s plant virology. 4th ed. India: Elsevier; 2004. p.180–2.
  9. 9. Li F, Xu X, Huang C, Gu Z, Cao L, Hu T. The AC5 protein encoded by mungbean yellow mosaic India virus is a pathogenicity determinant that suppresses RNA silencing-based antiviral defences. New Phytol. 2015;208:555–69. https://doi.org/10.1111/nph.13473
  10. 10. Cayalvizhi B, Nagarajan P, Raveendran M, Rabindran R, Selvam NJ, Kannan Bapu JR. Unraveling the responses of mungbean (Vigna radiata) to mungbean yellow mosaic virus through 2D-protein expression. Physiol Mol Plant Pathol. 2015;90:65–77. https://doi.org/10.1016/j.pmpp.2015.03.001
  11. 11. Zanardo LG, Carvalho CM. Cowpea mild mottle virus (Carlavirus, Betaflexiviridae): a review. Trop Plant Pathol. 2017;42:417–30. https://doi.org/10.1007/s40858-017-0168-y
  12. 12. Almeida AM, Piuga FF, Marin SR, Kitajima EW, Gaspar JO, Oliveira TG, et al. Detection and partial characterization of a carlavirus causing stem necrosis of soybean in Brazil. Fitopatol Bras. 2005;30:191–4. https://doi.org/10.1590/S0100-41582005000200016
  13. 13. Lukhovitskaya NI, Ignatovich IV, Savenkov EI, Schiemann J, Morozov SY, Solovyev AG. Role of the zinc-finger and basic motifs of chrysanthemum virus B p12 protein in nucleic acid binding, protein localization and induction of hypersensitive response upon expression from a viral vector. J Gen Virol. 2009;90(3):723–33. https://doi.org/10.1099/vir.0.005025-0
  14. 14. Murray MG, Thompson WF. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 1980;8(19):4321–6. https://doi.org/10.1093/nar/8.19.4321
  15. 15. Gaspar JO, Belintani P, Almeida AMR, Kitajima EW. A degenerate primer allows amplification of part of the 3′-terminus of three distinct carlavirus species. J Virol Methods. 2008;148(1–2):283–5. https://doi.org/10.1016/j.jviromet.2007.11.005
  16. 16. Routhu GK, Borah M, Siddappa S, Nath PD. Exogenous application of coat protein-specific dsRNA inhibits cognate cucumber mosaic virus of ghost pepper. J Plant Dis Prot. 2022;129(2):293–300. https://doi.org/10.1007/s41348-021-00558-4
  17. 17. Rajendran A, Lal SK. Assessing the need of pre-germination anaerobic stress-tolerant varieties in Indian soybean (Glycine max). Natl Acad Sci Lett. 2020;43:1–5. https://doi.org/10.1007/s40009-020-00937-9
  18. 18. Iizuka N, Rajeshwari R, Reddy DVR, Goto T, Muniyappa V, Bharathan N, et al. Natural occurrence of a strain of cowpea mild mottle virus on groundnut (Arachis hypogaea) in India. J Phytopathol. 1984;109(3):245–53. https://doi.org/10.1111/j.1439-0434.1984.tb00714.x
  19. 19. Varma A, Dhar AK, Mandal B. MYMV transmission and control in India. New Delhi: IARI; 1992. p.8–27.
  20. 20. Biswas KK, Tarafdar A, Kumar A, Dikshit HK, Malathi VG. Multiple infection in urdbean (Vigna mungo) in natural conditions by begomovirus, tospovirus and urdbean leaf crinkle virus complex. Indian Phytopathol. 2009;62:75–82.
  21. 21. Kumar S, Sahoo L, Tanti B. Whitefly transmitted yellow mosaic disease: severe threat to cowpea production in Assam, India. World Res J Biotechnol. 2016;3(1):53–6.
  22. 22. Chakraborty S, Vanitharani R, Chattopadhyay B, Fauquet CM. Supervirulent pseudorecombination and asymmetric synergism between genomic components of two distinct begomoviruses associated with severe tomato leaf curl disease in India. J Gen Virol. 2008;89(3):818–28. https://doi.org/10.1099/vir.0.82873-0
  23. 23. Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, et al. Geminivirus strain demarcation and nomenclature. Arch Virol. 2008;153:783–821. https://doi.org/10.1007/s00705-008-0037-6
  24. 24. Naimuddin K, Akram M. Detection of mixed infection of begomoviruses in cowpea and their molecular characterization based on CP gene sequences. J Food Legumes. 2010;23:46–52.
  25. 25. Brunt AA, Kenten RH. Cowpea mild mottle, a newly recognized virus infecting cowpeas (Vigna unguiculata) in Ghana. Ann Appl Biol. 1973;74:67–74. https://doi.org/10.1111/j.1744-7348.1973.tb07723.x
  26. 26. Thouvenel JC, Monsarrat A, Fauquet C. Isolation of cowpea mild mottle virus from diseased soybeans in the Ivory Coast. Plant Dis. 1982;66:336–7. https://doi.org/10.1094/PD-66-336
  27. 27. Zanardo LG, Silva FN, Bicalho AAC, Urquiza GPC, Lima ATM, Almeida AMR. Molecular and biological characterization of cowpea mild mottle virus isolates infecting soybean in Brazil and evidence of recombination. Plant Pathol. 2014;63:456–65. https://doi.org/10.1111/ppa.12092
  28. 28. Baranwal VK, Jain P, Saritha RK, Jain RK, Gautam NK. Detection and partial characterization of cowpea mild mottle virus in mungbean and urdbean by deep sequencing and RT-PCR. Crop Prot. 2015;75:77–9. https://doi.org/10.1016/j.cropro.2015.05.015
  29. 29. Yadav MK, Biswas KK, Lal SK, Baranwal VK, Jain RK. A distinct strain of cowpea mild mottle virus infecting soybean in India. J Phytopathol. 2013;161(10):739–44. https://doi.org/10.1111/jph.12119
  30. 30. Zanardo LG, de Souza GB, Alves MS. Transcriptomics of plant–virus interactions: a review. Theor Exp Plant Physiol. 2019;31(1):103–25. https://doi.org/10.1007/s40626-019-00143-z
  31. 31. Syller J. Facilitative and antagonistic interactions between plant viruses in mixed infections. Mol Plant Pathol. 2012;13(2):204–16. https://doi.org/10.1111/j.1364-3703.2011.00734.x

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