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Research Articles

Vol. 13 No. sp1 (2026): Recent Advances in Agriculture

Prevalence of collar rot of apple in Himachal Pradesh and its management through antagonistic microorganisms

DOI
https://doi.org/10.14719/pst.10524
Submitted
8 July 2025
Published
19-01-2026

Abstract

Surveys were conducted during 2022-2023 to reveal the incidence of collar rot in apple growing locations in the Mandi, Kullu and Shimla districts of Himachal Pradesh. The maximum incidence of collar rot of apple (52 %) occurred in the village Bulash of the Rohanda block, followed by the village Kalashan (40 %) in the Karsog block of the Mandi district of Himachal Pradesh. Phytophthora cactorum was isolated from diseased samples collected during the survey and was identified based on morphological and cultural characteristics. Among the fungal antagonists used in vitro, Trichoderma virens caused the greatest inhibition of pathogen radial growth, with values of 63 % (dual culture) and 40 % (volatile compound evaluation), respectively. Among the bacterial antagonists, the Bacillus cereus group was most effective in dual culture, with growth inhibition of 66 %, whereas volatile compound evaluation of bacterial antagonists revealed that Exiguobacterium aurantiacum caused maximum inhibition (66 %) of P. cactorum in vitro. Among the seven most effective antagonists evaluated under pot conditions, the Bacillus cereus group was the most effective, with a minimum disease incidence of 13 % up to 60 days after pathogen inoculation and a maximum disease control of 85 % in comparison with the positive control.

References

  1. 1. Jackson JE. Biology of apple and pears. Cambridge: Cambridge Univ Press; 2003. https://doi.org/10.1017/CBO9780511542657
  2. 2. Chen R, Wang J, Li Y, Song Y, Huang M, Feng P, et al. Quantifying the impact of frost damage during flowering on apple yield in Shaanxi province, China. Eur J Agron. 2023;142. https://doi.org/10.1016/j.eja.2022.126642
  3. 3. World Population Review. Apple production by country 2025. 2023. https://worldpopulationreview.com/country-rankings/apple-production-by-country
  4. 4. Chadha KL, Awasthi RP. Handbook of horticulture. New Delhi: Pusa. 2027. p. 132.
  5. 5. Sharma IM, Rathore R, Gupta B, Bhardwaj SS. Development of eco-friendly integrated management strategy against collar rot (Phytophthora cactorum (Leb. & Cohn) Schroet.) in apple. Proc Int Workshop Semin Exhib Phytophthora Dis Plantation Crops Manag. 2011;144-6.
  6. 6. Bharat NK. Biological control of diseases of temperate fruit crops. Int J Sci Nat. 2011;2:422-31.
  7. 7. Khan IH, Javaid A. In vitro biocontrol potential of Trichoderma pseudokoningii against Macrophomina phaseolina. Int J Agric Biol. 2020;24(4):730-6.
  8. 8. Khan IH, Javaid A, Ahmed D. Trichoderma viride controls Macrophomina phaseolina through its DNA disintegration and production of antifungal compounds. Int J Agric Biol. 2021;25(4):888-94. https://doi.org/10.17957/IJAB/15.1743
  9. 9. Ali A, Javaid A, Shoaib A, Khan IH. Effect of soil amendment with Chenopodium album dry biomass and two Trichoderma species on growth of chickpea var. Noor 2009 in Sclerotium rolfsii contaminated soil. Egypt J Biol Pest Control. 2020;30:102. https://doi.org/10.1186/s41938-020-00305-1
  10. 10. Akhtar R, Javaid A. Biological management of basal rot of onion by Trichoderma harzianum and Withania somnifera. Planta Daninha. 2018;36:e017170507. https://doi.org/10.1590/s0100-83582018360100009
  11. 11. Farzaneh M, Sharifi-Tehrani A, Ahmadzadeh M, Zad J. Biocontrol of Phytophthora cactorum, the causal agent of root and crown rot on apple (Malus × domestica) by formulated Pseudomonas fluorescens. Commun Agric Appl Biol Sci. 2007;72:891-900.
  12. 12. Sharf W, Javaid A, Shoaib A, Khan IH. Induction of resistance in chili against Sclerotium rolfsii by plant growth promoting rhizobacteria and Anagallis arvensis. Egypt J Biol Pest Control. 2021;31:16. https://doi.org/10.1186/s41938-021-00364-y
  13. 13. Zohaib KA, Bashir U, Khan IH, Javaid A, Anwar W. Synergistic effect of plant growth promoting rhizobacteria and Cirsium arvense against black scurf disease of potato. Sains Malays. 2024;53(9):3071-83. https://doi.org/10.17576/jsm-2024-5309-13
  14. 14. Ruano-Rosa D, Moral-Navarrete L, Lopez-Herrera CJ. Selection of T. harzianum isolates antagonistic to Rosellinia necatrix. Span J Agric Res. 2010;8:1084-97. https://doi.org/10.5424/sjar/2010084-1403
  15. 15. Sztejnberg A, Katan J. Control of Rosellinia necatrix in soil and in apple orchard by solarization and Trichoderma harzianum. Plant Dis. 1986;71:365-9. https://doi.org/10.1094/PD-71-0365
  16. 16. Dennis C, Webster J. Antagonistic properties of species-groups of Trichoderma: II. Production of volatile antibiotics. Trans Br Mycol Soc. 1971;57:41-4. https://doi.org/10.1016/S0007-1536(71)80078-5
  17. 17. Vincent JH. Distortion of fungal hyphae in the presence of certain inhibitors. Nature. 1947;15:580. https://doi.org/10.1038/159850b0
  18. 18. Minter DW, Cannon PF. International Mycological Institute descriptions of fungi and bacteria. Wallingford: CABI; 2015. p. 204.
  19. 19. Watanabe T. Pictorial atlas of soil and seed fungi: morphologies of cultured fungi and key to species. 3rd ed. Boca Raton: CRC Press; 2010.
  20. 20. Nakova M. Phytophthora root and crown rot on apples in Bulgaria. Pestic Phytomed. 2010;25:43-50. https://doi.org/10.2298/PIF1001043N
  21. 21. Naffaa WG, Rashid A. Fungal pathogens associated with crown and collar rot of apple trees in southern Syria. Acta Agric Slov. 2017;109:103-9. https://doi.org/10.14720/aas.2017.109.1.10
  22. 22. Ruiz-Cisneros MF, Rios-Velasco C, Berlanga-Reyes DI, Ornelas-Paz JDJ, Acosta-Muniz CH, Romo-Chacon A, et al. Incidence and causal agents of root diseases and its antagonists in apple orchards of Chihuahua, Mexico. Rev Mex Fitopatol. 2017;35:437-62. https://doi.org/10.18781/R.MEX.FIT.1704-3
  23. 23. Gupta B, Sharma U, Verma S. Refinement of technology for the management of collar rot in apple. Int J Curr Microbiol Appl Sci. 2018;7:1551-6. https://doi.org/10.20546/ijcmas.2018.706.185
  24. 24. Pane A, Cacciola SO, Scibetta S, Bentivenga G, San Lio GM. Four Phytophthora species causing foot and root rot of apricot in Italy. Plant Dis. 2009;93:844-5. https://doi.org/10.1094/PDIS-93-8-0844C
  25. 25. Sutton TB, Aldwinckle HS, Agnello AM, Walgenbach JF. Compendium of apple and pear diseases and pests. 2nd ed. Saint Paul: Am Phytopathol Soc; 2014. p. 218. https://doi.org/10.1094/9780890544334
  26. 26. Mannai S, Horrigue-Raouani N, Boughalleb-M Hamdi N. Characterization of Fusarium species associated with apple decline in Tunisian nurseries. J Biol Stud. 2018;1:14-34. https://doi.org/10.62400/jbs.v1i2.7
  27. 27. Tewoldemedhin YT, Mazzola M, Spies CFJ, McLeod A. Characterization of fungi (Fusarium and Rhizoctonia) and oomycetes (Phytophthora and Pythium) associated with apple orchards in South Africa. Eur J Plant Pathol. 2011;130:215-29. https://doi.org/10.1007/s10658-011-9747-9
  28. 28. Xiang L, Zhao L, Wang M, Huang J, Chen X, Yin C. Physiological responses of apple rootstock M.9 to infection by Fusarium solani. Hortic Sci. 2021;8:1-8. https://doi.org/10.21273/HORTSCI15945-21
  29. 29. Zhou Z, Zhu YM, Tian Y, Yao JL, Bian S, Zhang HT. MdPR4, a pathogenesis related protein in apple, is involved in chitin recognition and resistance response to apple replant disease pathogens. J Plant Physiol. 2021;260:153390. https://doi.org/10.1016/j.jplph.2021.153390
  30. 30. Duan YN, Jiang WT, Zhang R, Chen R, Chen XS, Yin CM. Discovery of Fusarium proliferatum f. sp. Malus domestica causing apple replant disease in China. Plant Dis. 2022;106:2958-66. https://doi.org/10.1094/PDIS-12-21-2802-RE
  31. 31. Souli M, Boughalleb N, Abad-Campos P, Alvarez LA, Perez-Sierra A, Armengol J. Diversity of the Pythium community infecting crown and roots of apple in Tunisia. Res Plant Biol. 2011;1:16-22.
  32. 32. Souli M, Abad-Campos P, Perez-Sierra A, Fatouch S, Armengo J, Boughalleb N. Etiology of apple dieback in Tunisia and abiotic factors associated with the disease. Afr J Microbiol Res. 2014;8:2272-81. https://doi.org/10.5897/AJMR2013.6141
  33. 33. Wang C, Wang Z, Qiao X, Li Z, Li F, Chen M. Antifungal activity of volatile organic compounds from Streptomyces alboflavus TD-1. FEMS Microbiol Lett. 2013;341:45-51. https://doi.org/10.1111/1574-6968.12088
  34. 34. Gallegly ME, Hong C. Phytophthora: identifying species by morphology and DNA fingerprints. Saint Paul: Am Phytopathol Soc; 2008. p.168.
  35. 35. Hansen EH, Wilcox WF, Reeser PW, Sutton W. Phytophthora rosacearum and P. sansomeana, new species segregated from the Phytophthora megasperma complex. Mycologia. 2009;101:129-35. https://doi.org/10.3852/07-203
  36. 36. Nechwatal J, Bakony J, Cacciola SO, Cooke DEL, Jung T, Brasier CM. The morphology, behavior and molecular phylogeny of Phytophthora taxon salixsoil and its redesignation as Phytophthora lacustris. Plant Pathol. 2013;62:355-69. https://doi.org/10.1111/j.1365-3059.2012.02638.x
  37. 37. Nagel JH, Gryzenhout M, Slippers B, Wingfield MJ, Hardy GESJ, Burgess TI. Characterization of Phytophthora hybrids from ITS clade 6 associated with riparian ecosystems in South Africa and Australia. Fungal Biol. 2013;117:329-47. https://doi.org/10.1016/j.funbio.2013.03.004
  38. 38. Belbahri L, McLeod A, Paul B, Calmin G, Moralejo E, Spies CFJ. Intraspecific and within-isolate sequence variation in the ITS rRNA gene region of Pythium mercuriale sp. nov. (Pythiaceae). FEMS Microbiol Lett. 2008;284:17-27. https://doi.org/10.1111/j.1574-6968.2008.01168.x
  39. 39. Welsh MF. Studies of crown rot of apple trees. Can J Res. 2011;20:457-90. https://doi.org/10.1139/cjr42c-040
  40. 40. Guillen-Cruz R, Hernandez-Castillo FD, Gallegos-Morales G, Rodriguez-Herrera R, Aguilar-Gonzalez CN, Padron-Corral E, et al. Bacillus sp. as biocontrol in soil infested with Fusarium spp., Rhizoctonia solani Kühn and Phytophthora capsici Leonian and its effect on chili (Capsicum annuum L.) growth and yield. Rev Mex Fitopatol. 2006;24:105-14.
  41. 41. Ephrem DZ, Amutha S, Dereje G, Mesfin T, Bekele K. Biocontrol activity of Trichoderma viride and Pseudomonas fluorescens against Phytophthora infestans under greenhouse conditions. J Agric Technol. 2011;7:1589-602.
  42. 42. Jagtap GP, Dhavale MC, Dey U. Evaluation of natural plant extracts, antagonists and fungicides in controlling root rot, collar rot, fruit rot and gummosis of citrus caused by Phytophthora sp. in vitro. Sci J Microbiol. 2012;1:27-47.
  43. 43. Mannai S, Jabnoun-Khiareddine H, Nasraoui B, Daami-Remadi M. Biocontrol of Pythium damping-off on pepper (Capsicum annuum) with selected fungal and rhizobacterial agents. Int J Phytopathol. 2020;9:29-42. https://doi.org/10.33687/phytopath.009.01.3083
  44. 44. Mudassir I, Maha J, Muhammad AZ, Erik A, Ramesh R, Vetukuri RR, et al. Biological control of strawberry crown rot, root rot and gray mold by the beneficial fungus Aureobasidium pullulans. Biol Control. 2021;66:535-45. https://doi.org/10.1007/s10526-021-10083-w
  45. 45. Rybakova D, Muller H, Olimi E, Schaefer A, Cernava T, Berg G. To defend or to attack? Antagonistic interactions between Serratia plymuthica and fungal plant pathogens, a species-specific volatile dialog. Front Sustain Food Syst. 2022;6:1020634. https://doi.org/10.3389/fsufs.2022.1020634
  46. 46. Motlagh MRS, Rad SA, Mohesien MT, Mossa MI, Seidavi A, Ghosh S, et al. Potential of selected tobacco endophytic fungi against Sclerotinia sclerotiorum, the causal agent of tobacco collar rot disease. Sydowia. 2023;75:221.
  47. 47. Jabiri S, Legrifi I, Benhammou M, Laasli SE, Mokrini F, Amraoui MB, et al. Screening of rhizobacterial isolates from apple rhizosphere for their biocontrol and plant growth promotion activity. Appl Microbiol. 2023;3:948-67. https://doi.org/10.3390/applmicrobiol3030065
  48. 48. Ramirez V, Martinez J, Bustillos-Cristales MDR, Catañeda-Antonio D, Munive JA, Baez A. Bacillus cereus MH778713 elicits tomato plant protection against Fusarium oxysporum. J Appl Microbiol. 2022;132:470-82. https://doi.org/10.1111/jam.15179
  49. 49. Gao H, Li P, Xu X, Zeng Q, Guan W. Research on volatile organic compounds from Bacillus subtilis CF-3: biocontrol effects on fruit fungal pathogens and dynamic changes during fermentation. Front Microbiol. 2018;9:456. https://doi.org/10.3389/fmicb.2018.00456
  50. 50. Gotor-Vila A, Teixido N, Di Francesco A, Usall J, Ugolini L, Torres R. Antifungal effect of volatile organic compounds produced by Bacillus amyloliquefaciens CPA-8 against fruit pathogen decays of cherry. Food Microbiol. 2017;64:219-25. https://doi.org/10.1016/j.fm.2017.01.006
  51. 51. Islam MR, Jeong YT, Lee YS, Song CH. Isolation and identification of antifungal compounds from Bacillus subtilis C9 inhibiting the growth of plant pathogenic fungi. Mycobiology. 2012;40:59-66. https://doi.org/10.5941/MYCO.2012.40.1.059
  52. 52. Bajoria S, Varshney AK, Pareek RP, Mohan MK, Ghosh P. Screening and characterization of antifungal clusterbean (Cyamopsis tetragonoloba) rhizobacteria. Biocontrol Sci Technol. 2008;18:139-56. https://doi.org/10.1080/09583150701818972
  53. 53. Bing L, Yanyan Z, Yanan C, Jinxin L, Ruiting W, Guowen C, et al. Identification and assessment of a biocontrol agent, Ochrobactrum intermedium I-5, for management of alfalfa root rot caused by Fusarium tricinctum. Phytopathology. 2021;111:1927-34. https://doi.org/10.1094/PHYTO-12-20-0549-R
  54. 54. Porras M, Barrau C, Arroyo FT, Santos B, Blanco C, Romero F. Reduction of Phytophthora cactorum in strawberry fields by Trichoderma spp. and soil solarization. Plant Dis. 2007;91:142-6. https://doi.org/10.1094/PDIS-91-2-0142
  55. 55. Anandhakumar J, Zeller W. Studies on efficacy and mode of action of rhizosphere bacteria against Phytophthora spp. in strawberry. 2004;27:261-4.
  56. 56. Sharma IM, Negi HS, Sharma S. Integrated management of collar rot in apple caused by Phytophthora cactorum. Indian Phytopathol. 2014;67:168-73.

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