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Research Articles

Vol. 13 No. sp1 (2026): Recent Advances in Agriculture

Quorum-quenching potential of Limosilactobacillus fermentum UAS LAB 6 oxidoreductase against dairy spoilage and plant pathogenic Pseudomonas sp.: A computational perspective

DOI
https://doi.org/10.14719/pst.12841
Submitted
20 November 2025
Published
05-02-2026

Abstract

Quorum-sensing (QS) regulates bacterial communication through N-acyl homoserine lactones (AHLs), which coordinate critical functions such as biofilm formation, virulence and spoilage activity. Disruption of this signaling, termed quorum-quenching (QQ), offers a sustainable strategy to mitigate pathogenicity without promising resistance. In this study, Limosilactobacillus fermentum UAS LAB 6, a lactic acid bacterium with known probiotic potential, was investigated for its ability to produce oxidoreductase enzymes capable of AHL modification. Whole-genome sequencing and annotation revealed multiple oxidoreductase candidates, of which a short-chain dehydrogenase/reductase (SDR) was selected for in silico characterization. Active site prediction and molecular docking analyses were performed using AutoDock Vina in PyRx 1.2 to evaluate enzyme interactions with AHL molecules produced by Pseudomonas fluorescens, P. syringae and P. corrugata. Docking results demonstrated high binding affinities, particularly between the SDR enzyme and 3-oxo-C14-HSL (ΔG = -7.4 kcal/mol), indicating strong substrate-enzyme interactions. The oxidoreductase exhibited a substrate preference toward long-chain and 3-oxo-substituted AHLs, consistent with its potential role in reducing the C3-oxo group to inactive 3-hydroxy derivatives. These findings suggest that L. fermentum oxidoreductases may effectively interfere with AHL-mediated signaling in plant-pathogenic and dairy spoilage Pseudomonas spp. Overall, this study highlights the dual quorum-quenching potential of LAB-derived oxidoreductases, offering an eco-friendly strategy to enhance plant health and food safety and through microbial signal disruption.

References

  1. 1. Rémy B, Plener L, Decloquement P, Armstrong N, Elias M, Daudé D, et al. Lactonase specificity is key to quorum quenching in Pseudomonas aeruginosa. Front Microbiol. 2020;11:762. https://doi.org/10.3389/fmicb.2020.00762
  2. 2. Chatterjee A, Cui Y, Chatterjee A. PsrA, the Pseudomonas sigma regulator, controls regulators of epiphytic fitness, quorum-sensing signals and plant interactions in P. syringae pv. tomato DC3000. Appl Environ Microbiol. 2007;73:3684-94. https://doi.org/10.1128/AEM.02445-06
  3. 3. Zhang W, Fan X, Li J, Ye T, Mishra S, Zhang L, et al. Exploration of the quorum-quenching mechanism in Pseudomonas nitroreducens W-7 and its potential to attenuate the virulence of Dickeya zeae EC1. Front Microbiol. 2021;12:694161. https://doi.org/10.3389/fmicb.2021.694161
  4. 4. Fawzy AA, Raafat MM, Mahmoud R, Helmy OM. Quorum quenching by endophytic Bacillus cereus AL1: A lactonase-based anti-virulence strategy against Pseudomonas aeruginosa. BMC Microbiol. 2025;25(1):669. https://doi.org/10.1186/s12866-025-04396-4
  5. 5. Dong W, Zhu J, Guo X, Kong D, Zhang Q, Zhou Y, et al. Characterization of AiiK, an AHL lactonase, from Kurthia huakui LAM0618T and its application in quorum quenching on Pseudomonas aeruginosa PAO1. Sci Rep. 2018;8:6013. https://doi.org/10.1038/s41598-018-24507-8
  6. 6. Bijtenhoorn P, Mayerhofer H, Müller-Dieckmann J, Utpatel C, Schipper C, Hornung C, et al. A novel metagenomic short-chain dehydrogenase/reductase attenuates Pseudomonas aeruginosa biofilm formation and virulence on Caenorhabditis elegans. PLoS One. 2011;6(10):e26278. https://doi.org/10.1371/journal.pone.0026278
  7. 7. Rehman Z, Leiknes T. Quorum-quenching bacteria isolated from Red Sea sediments reduce biofilm formation by Pseudomonas aeruginosa. Front Microbiol. 2018;9:1354. https://doi.org/10.3389/fmicb.2018.01354
  8. 8. Fetzner S. Quorum quenching enzymes. J Biotechnol. 2015;201:2-14. https://doi.org/10.1016/j.jbiotec.2014.09.001
  9. 9. Hossain TJ, Mozumder HA, Ali F. Functional genomics of the lactic acid bacterium Limosilactobacillus fermentum LAB-1: Metabolic, probiotic and biotechnological perspectives. Heliyon. 2022;8:e11412. https://doi.org/10.1016/j.heliyon.2022.e11412
  10. 10. Kim B, Meng Z, Xu X, Baek S, Pathiraja D, Choi I, et al. Complete genome sequence of Limosilactobacillus fermentum JNU532 as a probiotic candidate for functional food and feed supplements. J Anim Sci Technol. 2022;65(2):271-4. https://doi.org/10.5187/jast.2022.e91
  11. 11. Aman M, Aneeqha N, Bristi K, Deeksha J, Afza N, Sindhuja V, et al. Lactic acid bacteria inhibit quorum sensing and biofilm formation of Pseudomonas aeruginosa strain JUPG01 isolated from rancid butter. Biocatal Agric Biotechnol. 2021;36:102115. https://doi.org/10.1016/j.bcab.2021.102115
  12. 12. Licciardello G, Bertani I, Steindler L, Bella P, Venturi V, Catara V. Pseudomonas corrugata contains a conserved N-acyl homoserine lactone quorum sensing system; its role in tomato pathogenicity and tobacco hypersensitivity response. FEMS Microbiol Ecol. 2007;61(2):222-34. https://doi.org/10.1111/j.1574-6941.2007.00338.x
  13. 13. Ananda M, Rusmana I, Akhdiya A. Quorum quenching of Bacillus cereus INT1c against Pseudomonas syringae. J Phys Conf Ser. 2019;1277:012009. https://doi.org/10.1088/1742-6596/1277/1/012010
  14. 14. Zhang Y, Yu H, Xie Y, Guo Y, Cheng Y, Yao W. Inhibitory effects of hexanal on acylated homoserine lactones (AHLs) production to disrupt biofilm formation and enzyme activity in Erwinia carotovora and Pseudomonas fluorescens. J Food Sci Technol. 2023;60:372-81. https://doi.org/10.1007/s13197-022-05624-9
  15. 15. De Maeyer K, D’Aes J, Hua GKH, Perneel M, Vanhaecke L, Noppe H, et al. N-acyl homoserine lactone quorum-sensing signalling in antagonistic phenazine-producing Pseudomonas isolates from the red cocoyam rhizosphere. Microbiology. 2011;157:459-72. https://doi.org/10.1099/mic.0.043125-0
  16. 16. Ge Z, Du X, Liu J, Zhu J, Hao H, Bi J, et al. Benzyl isothiocyanate suppresses biofilms and virulence factors as a quorum-sensing inhibitor in Pseudomonas fluorescens. LWT. 2024;204:116387. https://doi.org/10.1016/j.lwt.2024.116387
  17. 17. Li T, Wang D, Ren L, Mei Y, Ding T, Li Q, et al. Involvement of exogenous N-acyl-homoserine lactones in spoilage potential of Pseudomonas fluorescens isolated from refrigerated turbot. Front Microbiol. 2019;10:2716. https://doi.org/10.3389/fmicb.2019.02716
  18. 18. Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading. J Comput Chem. 2010;31:455-61. https://doi.org/10.1002/jcc.21334
  19. 19. Bulut G, Yaşa İ, Eren Eroğlu AE. Selection and molecular response of AHL-lactonase (aiiA) producing Bacillus sp. under penicillin G-induced conditions. Protein J. 2023;42(4):427-36. https://doi.org/10.1007/s10930-023-10115-7
  20. 20. Liu Y, Ebalunode JO, Briggs JM. Insights into the substrate binding specificity of quorum-quenching acylase PvdQ. J Mol Graph Model. 2019;88:104-20. https://doi.org/10.1016/j.jmgm.2019.01.006
  21. 21. Wu Y, Liu X, Yin M, Pei Y, Cui Y, Li J, et al. Combining metagenomic sequencing and molecular docking to understand signalling molecule degradation characteristics of quorum quenching consortia. Environ Res. 2025;268:120815. https://doi.org/10.1016/j.envres.2025.120815
  22. 22. Czajkowski R, Jafra S. Quenching of acyl-homoserine lactone-dependent quorum sensing by enzymatic disruption of signal molecules. Acta Biochim Pol. 2009;56(1):1-16. https://doi.org/10.18388/abp.2009_2512
  23. 23. Lee J, Zhang L. The hierarchy quorum sensing network in Pseudomonas aeruginosa. Protein Cell. 2015;6(1):26-41. https://doi.org/10.1007/s13238-014-0100-x
  24. 24. Anandan K, Vittal RR. Quorum quenching activity of AiiA lactonase KMMI17 from endophytic Bacillus thuringiensis KMCL07 on AHL-mediated pathogenic phenotype in Pseudomonas aeruginosa. Microb Pathog. 2019;132:230-42. https://doi.org/10.1016/j.micpath.2019.05.015
  25. 25. Winans SC, Bassler BL. Chemical communications among bacteria. In: Wang LH, Dong YH, Zhang LH, editors. Quorum quenching: impact and mechanisms. Wiley; 2008:379-92. https://doi.org/10.1128/9781555815578.ch24
  26. 26. Spangler JR, Dean SN, Leary DH, Walper SA. Response of Lactobacillus plantarum WCFS1 to the Gram-negative pathogen-associated quorum sensing molecule N-3-oxododecanoyl homoserine lactone. Front Microbiol. 2019;10:715. https://doi.org/10.3389/fmicb.2019.00715
  27. 27. Ghanei-Motlagh R, Mohammadian T, Gharibi D, Menanteau-Ledouble S, Mahmoudi E, Khosravi M, et al. Quorum quenching properties and probiotic potentials of intestinal associated bacteria in Asian sea bass Lates calcarifer. Mar Drugs. 2020;18(1):23. https://doi.org/10.3390/md18010023
  28. 28. Ma Z, Ajibade A, Zou X. Docking strategies for predicting protein-ligand interactions and their application to structure-based drug design. Commun Inf Syst. 2024;24(3):199-230. https://doi.org/10.4310/CIS.241021221101
  29. 29. Iñiguez-Luna MI, Cadena-Zamudio JD, Ramírez-Mosqueda MA, Aguirre-Noyola JL, Cadena-Zamudio DA, Cadena- Iñiguez J, et al. Molecular docking as a key driver of biocontrol for agri-food security. BioTech. 2025;14(4):80. https://doi.org/10.3390/biotech14040080
  30. 30. Sikdar R, Elias M. Quorum quenching enzymes and their effects on virulence, biofilm and microbiomes: a review of recent advances. Expert Rev Anti Infect Ther. 2020;18(12):1221-33. https://doi.org/10.1080/14787210.2020.1794815
  31. 31. Mellbye BL, Giguere AT, Bottomley PJ, Sayavedra-Soto LA. Quorum quenching of Nitrobacter winogradskyi suggests that quorum sensing regulates fluxes of nitrogen oxides during nitrification. mBio. 2016;7:e01753-16. https://doi.org/10.1128/mBio.01753-16
  32. 32. Zhu X, Chen WJ, Bhatt K, Zhou Z, Huang Y, Zhang LH, et al. Innovative microbial disease biocontrol strategies mediated by quorum quenching and their multifaceted applications: a review. Front Plant Sci. 2023;13:1063393. https://doi.org/10.3389/fpls.2022.1063393

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