Exploring rice genotypes for anaerobic germination: Towards sustainable direct seeding

Authors

DOI:

https://doi.org/10.14719/pst.3575

Keywords:

anaerobic germination, cluster analysis, correlation, principal component analysis, variability

Abstract

Direct-seeded rice (DSR) production is the primary focus of this study, which explores the diversity of rice genotypes concerning their ability to withstand anaerobic germination conditions. Using advanced statistical analysis, a total of 250 rice cultivars were assessed for several anaerobic germination attributes. Significant variability was observed among genotypes for key traits including germination % (ARC14855, AG 387), shoot length and seedling dry weight, indicating potential donors for anaerobic germination tolerance. Trait association analysis, variability analysis, principal component analysis and cluster analysis were employed to uncover the genetic and phenotypic factors influencing anaerobic germination tolerance. The genotypes of cluster III could be used as donors for anaerobic germination studies, as the genotypes have revealed high average values for all the traits. The findings underscore the importance of genetic variability and heritability in breeding resilient rice varieties suited for DSR cultivation, offering valuable insights for enhancing rice cultivation practices in the face of challenges such as water scarcity and labour shortages. To improve the sustainability and productivity of paddy production systems, this research advances rice breeding procedures that aim to create varieties tolerant to anaerobic conditions.

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References

Rauf M, Choi YM, Lee S, Lee MC, Oh S, Hyun DY. Evaluation of anaerobic germinability in various rice subpopulations: identifying genotypes suitable for direct-seeded rice cultivation. Euphytica. 2019;215:1-15. https://doi.org/10.1007/s10681-019-2341-5

Kuya N, Sun J, Iijima K, Venuprasad R, Yamamoto T. Novel method for evaluation of anaerobic germination in rice and its application to diverse genetic collections. Breed Sci. 2019;69(4):633-39. https://doi.org/10.1270/jsbbs.19003

Farooq M, Siddique KHM, Rehman H, Aziz T, Lee DJ, Wahid A. Rice direct seeding: Experiences, challenges and opportunities. Soil Tillage Res. 2011;111(2):87-98. https://doi.org/10.1016/j.still.2010.10.008

Septiningsih EM, Ignacio JCI, Sendon PMD, Sanchez DL, Ismail AM, Mackill DJ. QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red. Theor Appl Genet. 2013;126:1357-66. https://doi.org/10.1007/s00122-013-2057-1

Miro B, Ismail AM. Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.). Vol. 4, Frontiers in Plant Science. Frontiers Research Foundation; 2013. https://doi.org/10.3389/fpls.2013.00269

Ghosal S, Casal C, Quilloy FA, Septiningsih EM, Mendioro MS, Dixit S. Deciphering genetics underlying stable anaerobic germination in rice: Phenotyping, QTL identification and interaction analysis. Rice. 2019;12(1). https://doi.org/10.1186/s12284-019-0305-y

Sandhu N, Yadav S, Cruz MTS, Kumar A. Developing climate-resilient, direct-seeded, adapted multiple-stress-tolerant rice applying genomics-assisted breeding. Front Plant Sci. 2021;12:637488. https://doi.org/10.3389/fpls.2021.637488

Hsu SK, Tung CW. Genetic mapping of anaerobic germination-associated QTLs controlling coleoptile elongation in rice. Rice. 2015;8:1-12. https://doi.org/10.1186/s12284-015-0072-3

Nghi KN, Tondelli A, Valè G, Tagliani A, Marè C, Perata P et al. Dissection of coleoptile elongation in japonica rice under submergence through integrated genome-wide association mapping and transcriptional analyses. Plant Cell Environ. 2019;42(6):1832-46. https://doi.org/10.1111/pce.13540

Agbeleye OA, Olubiyi MR, Ehirim BO, Shittu AO, Jolayemi OL, Adetimirin VO et al. Screening African rice (O. glaberrima Steud.) for tolerance to abiotic stress. III. flooding. SABRAO J Breed Genet. 2019;51(2).

Darko Asante M, Ipinyomi SO, Abe A, Adjah KL, Aculey P, Kwame Bam R et al. Genetic variability for and tolerance to anaerobic germination in rice (Oryza sativa L.). J Crop Improv. 2021;35(6):832-47. https://doi.org/10.1080/15427528.2021.1884631

Travis AJ, Norton GJ, Datta S, Sarma R, Dasgupta T, Savio FL et al. Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice. 2015;8:1-9. https://doi.org/10.1186/s12284-015-0068-z

Norton GJ, Travis AJ, Douglas A, Fairley S, Alves EDP, Ruang-areerate P et al. Genome-wide association mapping of grain and straw biomass traits in the rice Bengal and Assam aus panel (baap) grown under alternate wetting and drying and permanently flooded irrigation. Front Plant Sci. 2018 Sep;9. https://doi.org/10.3389/fpls.2018.01223

Abdul-Baki AA, Anderson JD. Vigor determination in soybean seed by multiple criteria 1. Crop Sci. 1973;13(6):630-33. https://doi.org/10.2135/cropsci1973.0011183X001300060013x

Barik J, Kumar V, Lenka SK, Panda D. Genetic potentiality of lowland indigenous indica rice (Oryza sativa L.) landraces to anaerobic germination potential. Plant Physiol Reports. 2019;24:249-61. https://doi.org/10.1007/s40502-019-00441-3

Ray S, Vijayan J, Sarkar RK. Germination stage oxygen deficiency (GSOD): An emerging stress in the era of changing trends in climate and rice cultivation practice. Front Plant Sci. 2016;7:192116. https://doi.org/10.3389/fpls.2016.00671

Partheeban C, Srividhya S, Raveendran M, Vijayalakshmi D. Designing new screening methods and physiological dissection of anaerobic stress tolerance in rice. Int J Curr Microbiol Appl Sci. 2017;6(5):580-90. https://doi.org/10.20546/ijcmas.2017.605.067

Ismail AM, Ella ES, Vergara GV, Mackill DJ. Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa). Ann Bot. 2009;103(2):197-209. https://doi.org/10.1093/aob/mcn211

Hirano H, Watanabe T, Fukuda M, Fukao T. The impact of carbohydrate management on coleoptile elongation in anaerobically germinating seeds of rice (Oryza sativa L.) under light and dark cycles. Plants. 2023;12(7):1565. https://doi.org/10.3390/plants12071565

Singh Y, Singh AK, Sharma N, Nehal N. Effect of anaerobic condition on germination and seedling growth in different rice cultivars. J Pharmacogn Phytochem. 2018;7(2S):166-68.

Roy SC, Shil P. Assessment of genetic heritability in rice breeding lines based on morphological traits and caryopsis ultrastructure. Sci Rep. 2020;10(1):7830. https://doi.org/10.1038/s41598-020-63976-8

Ajmera S, Kumar SS, Ravindrababu V. Evaluation of genetic variability, heritability and genetic advance for yield and yield components in rice genotypes. Int J Curr Microbiol Appl Sci. 2017;6(10):1657-64. https://doi.org/10.20546/ijcmas.2017.610.200

Adhikari BN, Joshi BP, Shrestha J, Bhatta NR. Genetic variability, heritability, genetic advance and correlation among yield and yield components of rice (Oryza sativa L.). J Agric Nat Resour. 2018;1(1):149-60. https://doi.org/10.3126/janr.v1i1.22230

Demeke B, Dejene T, Abebe D. Genetic variability, heritability and genetic advance of morphological, yield related and quality traits in upland rice (Oryza Sativa L.) genotypes at Pawe, Northwestern Ethiopia. Cogent Food Agric. 2023;9(1):2157099. https://doi.org/10.1080/23311932.2022.2157099

Sudeepthi K, Srinivas T, Ravi Kumar B, Jyothula DPB, Nafeez Umar SK. Principal component analysis for anaerobic germination traits in rice (Oryza sativa L.). IJCS. 2020;8(1):1977-82. https://doi.org/10.22271/chemi.2020.v8.i1ac.8555

Ravikanth B, Satyanarayana PV, Chamundeswari N, Rani AY, Rao SV, Babu RD. Genetic variability studies on agronomic and physiological traits suitable for direct seeding in rice (Oryza sativa L.). Andhra Agri J. 2018;65(2):315-19.

Srilakshmi P, Chamundeswari N, Ahamed LM, Rao SV. Assessment of genetic variability studies in wet direct sown rice. Andhra Agri J. 2018;65(3):555-60.

Shrestha J, Subedi S, Kushwaha UKS, Maharjan B. Evaluation of growth and yield traits in rice genotypes using multivariate analysis. Heliyon. 2021;7(9). https://doi.org/10.1016/j.heliyon.2021.e07940

Yadav SK, Suresh BG, Pandey P, Kumar B. Assessment of genetic variability, correlation and path association in rice (Oryza sativa L.). J Biol Sci. 2010;18(0):1-8. https://doi.org/10.3329/jbs.v18i0.8767

Chakma SP, Huq H, Mahmud F, Husna A. Genetic diversity analysis in rice (Oryza sativa L.). 2012; https://doi.org/10.3329/bjpbg.v25i1.17010

Anandan A, Eswaran R, Prakash M. Diversity in rice genotypes under salt affected soil based on multivariate analysis. 2011.

Published

10-06-2024 — Updated on 01-07-2024

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How to Cite

1.
Vijaya Kumar Reddy C, P R, Panda S, Dash M, A A, D L, K.C S, R.K P. Exploring rice genotypes for anaerobic germination: Towards sustainable direct seeding. Plant Sci. Today [Internet]. 2024 Jul. 1 [cited 2024 Nov. 23];11(3). Available from: https://horizonepublishing.com/journals/index.php/PST/article/view/3575

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Research Articles